Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g1350 ATGGAAACCACGTCTAAATCCAGACCCTCTGCGGCGGTTCCCTGCGATTTCTGCGACTCAAAAACGGCGGTTGTACACTGCAGAGCCGACTCTGCAAAGCTCTGTCTGTTGTGCGATCGACATGTGCACTCGGCCAATGCCCTGTCTCGCAAGCACCTCCGCTCACAGATCTGTGACAACTGCAGGACCGAACCGGTGTCCTTTCGATGCTTCACCGACAATCTTGCTCTCTGCCAGAGCTGCGACTGGGACTCTCATGGTAATTGCTCAGTCCCGTCTCTCCACGAGAGGACTCCCGTGGAAAGCTTCTCAGGGTGTCCCTCTCCACTCGAGCTCGCTTCTGTGTTTCGAGTGGATTTGAAGGATGGGAATTGGAGTAGTTGGAATTTCGGGTCGGTGAATGTTCAGGATTTTGTGGTTCCGGGCGAGAATTGCTATGCTGGGTGTGGTACGAAAGTAGAGAAGAACGGGATAAGCGTGGTGTATGAGCAATTGGTGGACTTAATACGGAGCGATGTGGATGTGGTGCGGGGGGATGTGGACGGAGATGGAGATGAGGGTGAGGATGGTGCTGAACTGGGTCCAGGGACGCCGGGTAGGTGTGCTAATATGGGGAATTTTCAAGGTGTTGATTTAGATAATGGTGATGATGAAGAGTTGTTGCGGCAGCAAACGCCGTTTACGTCTTTGCTTATGTTGCCGACGCCTGTTGATGCCAGAGACACTGGCTGTGGTTATGGTTGCGCAGTGGAAGGAGACGCTATGTGGGATCGTGGCCACCTTTCATATCAGGCACCCCAGATATGGGATTTTCATTTGGGAAGATCAAGGATTTGCAAAGAAACTAGTCCAGAAGCAGGATACGATGTGGACAATTCTGGTTTTGTGATCAAGAATTACAGTGAAATTACCAAGGGATCTTCCTTGACAAGAACAAAAGCGTTACAAGGCATGTATGAGATGAATTGCACAACAACCCATGAGGATATCCTGTCAAAAAATAGTCATTCAAATAAAGCATTGTCAAGCCAGGGACCAACGACAGCAGAGAGCAACAACATACCTATAGTAGGGCCATCATCAGAGTCCTGGACAGCTGAACCCAATACAAACAGCATTAAAAGTATGCAGTTCAAGGATCTCCTTATTGGGAGTGGAACTGCAAGAACAGAGACAACCAATGTTGATATGGAGCTGCTGGCACAGAACAGAGGCCATGCCATGTTACGCTACAAGGAGAAGAAGAAAACTCGAAGATACGAGAAGCACATCCGCTATGAGTCAAGGAAGGCCAGAGCCGACACTAGAAAGCGAGTGAAAGGTAGGTTTGTGAAGGCAAGTGACTCCTGA 1350 0.4933 METTSKSRPSAAVPCDFCDSKTAVVHCRADSAKLCLLCDRHVHSANALSRKHLRSQICDNCRTEPVSFRCFTDNLALCQSCDWDSHGNCSVPSLHERTPVESFSGCPSPLELASVFRVDLKDGNWSSWNFGSVNVQDFVVPGENCYAGCGTKVEKNGISVVYEQLVDLIRSDVDVVRGDVDGDGDEGEDGAELGPGTPGRCANMGNFQGVDLDNGDDEELLRQQTPFTSLLMLPTPVDARDTGCGYGCAVEGDAMWDRGHLSYQAPQIWDFHLGRSRICKETSPEAGYDVDNSGFVIKNYSEITKGSSLTRTKALQGMYEMNCTTTHEDILSKNSHSNKALSSQGPTTAESNNIPIVGPSSESWTAEPNTNSIKSMQFKDLLIGSGTARTETTNVDMELLAQNRGHAMLRYKEKKKTRRYEKHIRYESRKARADTRKRVKGRFVKASDS* 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g1350 449 ProSiteProfiles Zinc finger B-box type profile. 10 57 IPR000315 GO:0008270
Vvi14g1350 449 ProSiteProfiles CCT domain profile. 404 446 IPR010402 GO:0005515
Vvi14g1350 449 MobiDBLite consensus disorder prediction 429 449 - -
Vvi14g1350 449 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 14 448 - -
Vvi14g1350 449 Pfam B-box zinc finger 56 99 IPR000315 GO:0008270
Vvi14g1350 449 SMART bboxneu5 58 100 IPR000315 GO:0008270
Vvi14g1350 449 SMART bboxneu5 10 57 IPR000315 GO:0008270
Vvi14g1350 449 MobiDBLite consensus disorder prediction 179 199 - -
Vvi14g1350 449 MobiDBLite consensus disorder prediction 335 368 - -
Vvi14g1350 449 CDD Bbox1_BBX-like 14 57 - -
Vvi14g1350 449 ProSiteProfiles Zinc finger B-box type profile. 53 100 IPR000315 GO:0008270
Vvi14g1350 449 Pfam CCT motif 404 446 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi14g1350 Vvi-Chr14 25084927 25088322 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi14g1350 7 448 C2C2-CO-like Transcription Factor Family AT2G33500 41.505 1.35e-95 291
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Vvi14g1350 zf-B_box 2.8e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g1350 - - vvi:100242976 889.412