Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g1341 ATGATGGAGCAAAACGAGGCGTATGCTTTAATGGCAGGTGTTGGGGGTGAGCTTAGCTTTGTCACAGTGAGAGGGGACAAGACTCATGAGGGGTCGGATCGGAGTCCACCCACTCGTGACCTCGTTGCCGCTTCCAGTTTCGGTGTCCAAGGGAGGAAAAGGATGCCCAGACAGAGGCGATCATCCGCCATCAACCTTCTCACTTTTGCTCCTTCCACCTCCCCGCACGTGCCTCCCCCTCCCCCCGCACGTGCAATTGATCGAAAGTGGCTAAGATTTCTTTTCGAGAAAGAACTCAAGAACAGCGATGTAGGCTCCCTTAGGAGAATGGTACTCCCGAAGAAATCGGCTGAGACTCACCTCCCTCTCCTTGAGGCAAAGGAAGGGATTCTCATCACCATGTATGATTTGGATGGCCAGCATGTTTGGAACTTCAAGTACAGGTTTTGGCCCAATAATAATAGCCGAATGTATGTGCTTGAGAACACCGGGGAATTTGTTAATGTTCATGGACTACAGCTTGGAGACTACATTATGCTTTACCATGATGGTCAAACTCAGAGCTTAGTCATTGAGGCTAGGAAGGCTTCTGAAAAAAATCTGCACGCTGATCTAAGTAAGAATATCGCTGTCAGTGACCTCTTTCTTCAAGATCTGGAGGCCAATCGATCAAATTATTTTCTGGCAATGGACACAGGCACATCGTTTGTGTATGAGACCACCTTCTCGAATGATTCTCCGCTTGACTTTTTGGGTGGCTCGATGACCAACTATCCTGGTGGATCAGTGAGCAACTATTCAAGATTTGGAGCACTGGAAGGCTTTGGATCTGTAGAGAGCTTGTCACTCGATGATTTCTGTTGA 864 0.4815 MMEQNEAYALMAGVGGELSFVTVRGDKTHEGSDRSPPTRDLVAASSFGVQGRKRMPRQRRSSAINLLTFAPSTSPHVPPPPPARAIDRKWLRFLFEKELKNSDVGSLRRMVLPKKSAETHLPLLEAKEGILITMYDLDGQHVWNFKYRFWPNNNSRMYVLENTGEFVNVHGLQLGDYIMLYHDGQTQSLVIEARKASEKNLHADLSKNIAVSDLFLQDLEANRSNYFLAMDTGTSFVYETTFSNDSPLDFLGGSMTNYPGGSVSNYSRFGALEGFGSVESLSLDDFC* 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g1341 287 Pfam B3 DNA binding domain 95 195 IPR003340 GO:0003677
Vvi14g1341 287 CDD B3_DNA 93 195 IPR003340 GO:0003677
Vvi14g1341 287 ProSiteProfiles B3 DNA-binding domain profile. 95 197 IPR003340 GO:0003677
Vvi14g1341 287 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 72 200 IPR044800 GO:0003700
Vvi14g1341 287 Gene3D - 91 209 IPR015300 -
Vvi14g1341 287 SUPERFAMILY DNA-binding pseudobarrel domain 93 192 IPR015300 -
Vvi14g1341 287 SMART B3_2 95 197 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi14g1341 Vvi-Chr14 25028976 25030714 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi14g1341 47 286 B3 DNA Binding Superfamily AT3G26790 54.152 1.33e-86 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vvi14g1341 B3 5.6e-18 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g1341 - - vvi:100244687 569.696