Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g1332 ATGAGGGGCAGAGTTGTTAAAAACAATCAAAGCTGCAGCAGAAACCAGAAACAGATAACCACGCCAGCGGTCTCAGTTCGTTTCCTGTACATAACGTTCAAACTTTGGAATCTACAAATCTCTTCAAAACGATGCACTGAAAAAGCTACCTACCTTTTTCCTCACAGCTCCTTTCTTTCTCTCTCTTTCTTTCTTTCTTTCTTTCTCAAATCTCTCAAAGCAACTTCAGAAATGCTGTCCAGAGTGAACGGCGTCGTCTGGATGGATGGGGATGACGAGGACGCTGTTTCTTGGACCAGAAACAATGAAGTTGAGCCCAAGGACGATGACATGGGGGCCTCTCTTTCAACCTTCAAATCCATGCTCGAAGGTGACTGGTACGTCAACAGCAGTATGAACCCGGCTCACCAAGATATCCACGCCATCCAAAACCACCATGATATCAGAGACATTGGTTTTTGTTCGAATCCCTCTGCGGCAACTGATTCTCTGCTGTTGCAGCCGCTGGACTCCTCCTCTTCGTGTTCTCCCTCACCGGCGTTCACTCTCGACCCCTCACAGTCGCAGCCCTTCTTGCCCCCGAAGTCGTGCTTCTCTTCGCTGCTCAACGTCGTCTGCAGCAACCCTTTTGACAATGGCTTCGATTTGGGCTGCGAACCTGGGTTTCTCGCACCGTTACAGGGAATTCAGAGCTCGAATTCGCCTGGTTTGATGGGTTTCACCGGTCTCAGTTCGCAAACTCAGATGGGAACTCCCGAGCTCAGCTCCAGTTCCGAGTTTCCGATTTCTCGTTTGTTGCCGGCGTCAGACAGTACTGGAAGCTTAGGCGCTGGTTTTACTCCGGCCGGCTTTGAGGGTTTCGATGGTTCTGGTAACTCCCTTTTCCTCAACAGGTCCAAGGTTTTGAGGCCGCTCGAAGTTTTCCCTCCAGTTGGCGCACAGCCAACTCTTTTTCAGAAGCGAGCAGCGCTTCGACAAAGCTCCAGCGCGAGCGATAAATTGGGGAATTTAGGGTTTTTGGGTTGTAGAAGTAGTGAAGTACAGACGATGGTGGTTGATGGGAATTGGGGAAACAGAGTGGATGAAGAATTGGAGAAGAAAAAGAATAAAAATGAAGAGGAAGAGATCGACGAAGGGAGCTTCGACGTCTCGGGTTTGAATTATGATTCTGATGAGCCCACCGTGGATGAGCTCGCCAAGAACGGTGGAAGTAACTCAAATGCGAATAGTACTGTGACTGGTGGAGATCAGAAAGGGAAGAAGAAGGGGCTTCCGGCCAAAAATCTTATGGCTGAGAGGCGGCGGAGGAAGAAGCTTAATGACAGGCTCTACATGCTTAGGTCTGTCGTGCCCAAGATCAGCAAGATGGATAGAGCTTCTATCCTTGGGGATGCCATTGAGTACTTGAAGGAGCTTTTGCAAAGGATCAATGATCTCCATAATGAACTGGAATCAACCCCATCTGGCTCTTTGCTGGCGCCGGCTTCTACAAGCTTCCATCCTTTGACACCCACACCCCCTACTCTTCCCTGCCGTGTCAAAGAAGAGCTATGCCCTAGCTCATTGCCAAGCCCTAAAAGTCAACCAGCAAGGGTGGAGGTAAGGGTAAGAGAAGGAAGGGCTGTAAACATTCATATGTTTTGTGCCCGCAGACCAGGTCTCCTGCTCTCCACAATGAGGGCTCTGGACAACCTTGGATTGGACATCCAGCAGGCTGTCATCAGCTGCTTCAATGGGTTTGCATTGGATGTATTCAGAGCTGAGCAATGCAGGGAAGGCCAGGATGTACTGCCTGAACAAATCAAAGCAGTACTTCTGGATTCGGCAGGCTTCCACGGTATGCTGTAG 1848 0.4973 MRGRVVKNNQSCSRNQKQITTPAVSVRFLYITFKLWNLQISSKRCTEKATYLFPHSSFLSLSFFLSFFLKSLKATSEMLSRVNGVVWMDGDDEDAVSWTRNNEVEPKDDDMGASLSTFKSMLEGDWYVNSSMNPAHQDIHAIQNHHDIRDIGFCSNPSAATDSLLLQPLDSSSSCSPSPAFTLDPSQSQPFLPPKSCFSSLLNVVCSNPFDNGFDLGCEPGFLAPLQGIQSSNSPGLMGFTGLSSQTQMGTPELSSSSEFPISRLLPASDSTGSLGAGFTPAGFEGFDGSGNSLFLNRSKVLRPLEVFPPVGAQPTLFQKRAALRQSSSASDKLGNLGFLGCRSSEVQTMVVDGNWGNRVDEELEKKKNKNEEEEIDEGSFDVSGLNYDSDEPTVDELAKNGGSNSNANSTVTGGDQKGKKKGLPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIEYLKELLQRINDLHNELESTPSGSLLAPASTSFHPLTPTPPTLPCRVKEELCPSSLPSPKSQPARVEVRVREGRAVNIHMFCARRPGLLLSTMRALDNLGLDIQQAVISCFNGFALDVFRAEQCREGQDVLPEQIKAVLLDSAGFHGML* 616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g1332 615 SMART finulus 429 478 IPR011598 GO:0046983
Vvi14g1332 615 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 426 491 IPR036638 GO:0046983
Vvi14g1332 615 Gene3D - 417 487 IPR036638 GO:0046983
Vvi14g1332 615 CDD ACT_UUR-ACR-like 544 604 - -
Vvi14g1332 615 Pfam Helix-loop-helix DNA-binding domain 430 472 IPR011598 GO:0046983
Vvi14g1332 615 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 423 472 IPR011598 GO:0046983
Vvi14g1332 615 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 321 611 - -
Vvi14g1332 615 Coils Coil 357 377 - -
Vvi14g1332 615 CDD bHLH_AtAMS_like 426 490 - -
Vvi14g1332 615 Coils Coil 462 486 - -
Vvi14g1332 615 MobiDBLite consensus disorder prediction 364 428 - -
Vvi14g1332 615 MobiDBLite consensus disorder prediction 399 416 - -
Vvi14g1332 615 FunFam BHLH transcription factor 419 487 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi14g1332 Vvi-Chr14 24970037 24974501 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi14g1332 97 588 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G26744 59.200 2.93e-152 445
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vvi14g1332 HLH 2.4e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g1332 - - vvi:100265294 1131.32