Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g1325 ATGTCCATCTTGCCCGCACAAAACCAAGGATCCACATCGTCTTCTTCGGCAGCTCCTTCTCAAAACCCTAATCTCGATCATGGAATCCTCTTTCAACCACACCCTTCACCTCTCTCTCGATCTCCGCCCTCTCTCCCCAGTCACGTGCAAAACCTTGCATCGCTTCACATCTCCGACTCCGAATCTTCAGTCGCTTCATCCGAAGACGTTTCAGGTTCTTTGGCTCCAGCTGCAGCAGATTCTGGTGGATCTTCCAAAAAGGTGACTGAATTAGGTGTCCAAAATAGTAAGAAGAGTTTGCCTCACCAAAACACTGGTACACGGTCACAGTCTCGCTCAGTTGGTCGAGGGTCTGAATCTACTCAATCCAGAGGGAAACTGTCTGGACCCACTATTTCTCCTCGCAGCCAACAAGCTAGTGGGTCTATCAATTTTCATGGAAGCACAACTCATTCTGCAGGAAGAAAAACCCAGATGAATGGTAACCACTTACTGAATTTTCATTATGACCCTATTTCTCGTCCTCAACCAAGGGCTCCACCTCCAAGACGACAGCAGAAGATAAAGCCATACAACAAAGATCTATTCCTCCAAGCAAATTACAGGTTTGTTGTCTTAGATACAGGAAACCAGGTACCAGAGTTGATGGATCCAGATAAAATGTTACAGTGGGATGATATCATTTGTGTTAGGTATTCCACTCCGTTGCCTGTGCAGTGTCCCATTTGTTTGGAATGTCCCCTATGCCCACAGATAACCTCATGTGGACATATTTTTTGTTTCCCATGTATTCTGCGATACTTATTAATGGGTAAGGAGGATCATAAAGGTGACTGTTGGAAGAAATGCCCCCTATGTTTTGTGATGATATCTCCAAAGGATTTGTACACCCTCTATATTGAGAATGTTAAACAGTATTGTGTTGGTGATACTGCAGAGTTTATGCTTCTAACCCGGCAAAAAGATTCATTTACTCTGTCTGAGAAAAATAAACAAGAGACAGATGTAATGCCATGTAACAGTGAAGTCCATGATTCCTTTTCGAAATTCATATTCACGTCAGATGTGGATTTGTCTGTTAGAGAAGCCATATCAGATCTGGACAGTTGGTTGGTCAGAGCAGATTCGGGGCTTGTTGATGATTTGGAGAAGCTTCCATATGTTTGTGCCGCAGTGGAACAATTAGAACAGAGAAAGAAGTACTGGAATGAGCATGGGACCTGTAAGAGCACTATATCTGTTAAATATACTGATTGTCAGTCAGGATCTCATGTAATCCCATCCACCACAAATGTTGCTTGTTCTGATTATGAAGCATGTGGATTCAAATATGGATCACCATCTTCTGATGTAGATGACAAAAGTAAGTGGTTGGGTAACTTAACACCAGATAAATTAGATGGAGGGGAATGTTTGGTTCAGACTGCTGATATGGGTGAAACACTAGAAGGCCAATGCAGAGCTTTATCTTCTTCCTATGATGAAAACAAGAGCTTGCAAAGGCACTCAAGTGGTTCTAGAGATCTAAAGGATGATGACTCGTACAATTTCTACCAGGCAGTAGATGGTCAGCACCTCATTCTTCATCCTTTAAATATGAAGTGTCTTTTACACCATTATGGAGGCTATGCATTTCTCCCCAACAGAATAAGTGGAAGAATTTTACAGTTAGAGACAGTGACTCAGTCAGAGGCCATGAGGAGGCGCTATCGCTACTTAAGTCATTTTTCTTTAACAACAACGTTTCAGCTTTGTGAAATTGATCTTCGTGAGGTACTGCCTCCTAGTGCCTTTTTTCCTTTTATGGATGAAATCAAGAAGCGTGAGAGGCAGAGGAAGAAACTTGCCAGGAAGGATACGAAGGAGAAACTTAAGGCTGAAGCTACCACTACAGATTCTTTGCCCATACCATCCAGATTTGGAGAGTATGTGTACCCCCCTACGTTCTCCATAGATGATTTTGAAGCTTTGGGAAGTCCTGTGGTGACATCGACAAGCCCTCCGACATTTGGGGAAAGAAAACTATTCTCAAATGTCACCAAACTAGGCTTTGCAGCTGGGCATGATTCTCCAGGCTTGAAAATTGAGGAAGTCCATTCCGTGCATAGCACCAGTATGGCAAGCGATTCTTCTGGTGTGACTGGTTCAAGAAATGCAGGGACACCATCGTTTGCCAATGTGATATCCAGAGGGAAATCTGTTGAAAGTTTGGATGCATCCAAGACAATTGGCACAGGGAAAAAGGGGAAGAAATCGAATCAAATTCTTTTGTCAACTGCTGGTGGTCGGCGCTACTGA 2298 0.4321 MSILPAQNQGSTSSSSAAPSQNPNLDHGILFQPHPSPLSRSPPSLPSHVQNLASLHISDSESSVASSEDVSGSLAPAAADSGGSSKKVTELGVQNSKKSLPHQNTGTRSQSRSVGRGSESTQSRGKLSGPTISPRSQQASGSINFHGSTTHSAGRKTQMNGNHLLNFHYDPISRPQPRAPPPRRQQKIKPYNKDLFLQANYRFVVLDTGNQVPELMDPDKMLQWDDIICVRYSTPLPVQCPICLECPLCPQITSCGHIFCFPCILRYLLMGKEDHKGDCWKKCPLCFVMISPKDLYTLYIENVKQYCVGDTAEFMLLTRQKDSFTLSEKNKQETDVMPCNSEVHDSFSKFIFTSDVDLSVREAISDLDSWLVRADSGLVDDLEKLPYVCAAVEQLEQRKKYWNEHGTCKSTISVKYTDCQSGSHVIPSTTNVACSDYEACGFKYGSPSSDVDDKSKWLGNLTPDKLDGGECLVQTADMGETLEGQCRALSSSYDENKSLQRHSSGSRDLKDDDSYNFYQAVDGQHLILHPLNMKCLLHHYGGYAFLPNRISGRILQLETVTQSEAMRRRYRYLSHFSLTTTFQLCEIDLREVLPPSAFFPFMDEIKKRERQRKKLARKDTKEKLKAEATTTDSLPIPSRFGEYVYPPTFSIDDFEALGSPVVTSTSPPTFGERKLFSNVTKLGFAAGHDSPGLKIEEVHSVHSTSMASDSSGVTGSRNAGTPSFANVISRGKSVESLDASKTIGTGKKGKKSNQILLSTAGGRRY* 766
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g1325 765 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 234 301 IPR013083 -
Vvi14g1325 765 MobiDBLite consensus disorder prediction 1 186 - -
Vvi14g1325 765 CDD RING-HC_RNF10 238 295 - -
Vvi14g1325 765 MobiDBLite consensus disorder prediction 1 27 - -
Vvi14g1325 765 ProSiteProfiles Zinc finger RING-type profile. 240 286 IPR001841 -
Vvi14g1325 765 MobiDBLite consensus disorder prediction 87 164 - -
Vvi14g1325 765 FunFam RING finger protein 10 233 301 - -
Vvi14g1325 765 PANTHER RING FINGER 10 FAMILY MEMBER 65 765 IPR039739 -
Vvi14g1325 765 SUPERFAMILY RING/U-box 239 293 - -
Vvi14g1325 765 MobiDBLite consensus disorder prediction 43 70 - -
Vvi14g1325 765 ProSitePatterns Zinc finger RING-type signature. 255 264 IPR017907 -
Vvi14g1325 765 SMART ring_2 240 286 IPR001841 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi14g1325 66 716 C3H Transcription Factor Family AT3G26730 53.891 0.0 669
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g1325 - - vvi:100248015 1484.16