Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g1322 ATGGTGGTTCCATCTCTGCACTGTATGAATAATACTGTTGCCAATGGTGGTGTTGATCAAGAATTAACTACGGATAATCAGCATTCGATGGCTTCTGGTGGTTCTTCTATGGATAATAGGAGGAAATCTAAATCATCAGTTAAATCCGAAAAGAAGACTCTGAAGGTTGAGTCTGACGATACACATCCAGTTGAGAGGAGGTCCAGTGCCAGGATTCAAAAGCTGAAATCGGAAAAGGCCAGCAGCGTGTATCGCCTAGAAGAGTCACCAAACAGTCGACCGGAGCAATGTAGTAGGAAGAAAACAAAAGTGTACCAACGGCGCAAGGCGAATACGCACGAGGGGAGTGAAGAGGTAGTTGGAGAAGCTGTTTCGCCTACTGAAGGTTCGAGTGAGGCCATGGATAGCGATTGTGTGGAGAATGGTGAATCTACGAATCCGGTATTGATGGAGGTTGCGGCGAATGGGATAGTCAATGATGTGAGTACAACCAATGTTGTAGAGAAGAGCGTCTATGCCAAGGTGAAGGAAACTTTGAGGACTTTTAACAAATACTACCTGCACTTTGTACAGAAAGGGGATGCACCTGAAAAGGATGGGAGGCAGGGATCCAGGCGACCTGATTTAAAAGCGATATCCAAGATGATGGAGACTAATGCTATATTATACCCTGAGAAAAGATTTGGCCCCATTCCAGGTGTGGATGTGGGACACCAGTTCTTTTCACGGGCTGAAATGGTTGCAGTAGGTTTTCATAGTCATTGGCTGAACGGGATTGATTATATGGGGCAATCCTATAACAGAAGGGAATACAGTGGCTATACATTCCCACTTGCAGTGGCCATTGTCTTGTCAGGTCAATATGAAGATGATTTGGATAACTCTGAGGATGTTGTGTACACTGGTCAAGGTGGCAATAATTTACTTGGAAATAAGCGTCAAGTACAAGATCAAGTGATGGAACGTGGTAATTTGGCTTTAAAGAATTGTATGGAGCAGTGTGTGCCTGTTAGAGTAATTCGAGGCCACAAATCTGCAAATAGTTATGTCGGCAAAGTTTACACATATGATGGCTTATATAAGGTTGTCCAATATTGGGCTGAAAAAGGAGTTTCTGGATTTACAGTTTTTAAGTACCGCCTAAAGAGGCTTGAAGGGCAGCCAATTTTGACAACAAACCAGGTTCAATATGCCCGAGGACGTGTTCCTAACTCAATTTCAGAAATACGCGGGTTGGTTTGTGAAGACATTTCTGGAGGTCAAGAGGATATTCCTATTCCAGCCACCAATTTGGTTGATGATCCACCTTTTGCACCCACAGGTTTTACATATTGCAATTCGATTAAAGTTTCCAAAAGTGTAAAGCTCCCCTCAAATGCCATTGGATGCAATTGCAAAGGAACTTGTACAGATCCCAGAACTTGTTCTTGTGCTATGCTTAATGGGTCAGACTTTCCATATGTGCATCGTGATGGTGGCAGATTAATTGAAGCCAAGGATGTTGTGTTTGAATGTGGTCCAAAATGTGGCTGTGGACCTGGTTGTCTTAATCGGACATCTCAGAGGGGGCTAAAATATCGGCTTGAGGTCTTCCGCACTCCAAAGAAAGGGTGGGCTGTAAGATCTTGGGATTATATTCCTTCAGGAGCACCAATTTGTGAATATAAAGGAATACTTATGAGGACAGATGAATTAGATAATGTTTCTGATAATAATTATATTTTTGACATTGATTGCTTGCAAACAATGAGAGGGCTCGATGGAAGAGAGAGGCGATTTCGAGATGTATCCATGCCTACAAGTACTGATGATCAGAAATCTGAAAGTGTGCCAGAGTTCTGCATTGACGCTGGTTCCACTGGAAATGTTGCAAGGTTCATTAATCACAGTTGTGAACCCAATCTCTTTGTTCAGTGTGTTTTGAGTTCACACCATGATGCCAAGCTTGCTCGAGTAATGCTATTTGCTGCAGACAACATACCTCCTTTGCAGGAGCTTACATACGACTATGGTTACACCCTTGACAGTGTCATGGGTCCTGATGGCAAGATAAAACAGATGCTATGCTTCTGTGGTGCAGCAGATTGCCGGAAACGCCTACTCTAG 2106 0.4326 MVVPSLHCMNNTVANGGVDQELTTDNQHSMASGGSSMDNRRKSKSSVKSEKKTLKVESDDTHPVERRSSARIQKLKSEKASSVYRLEESPNSRPEQCSRKKTKVYQRRKANTHEGSEEVVGEAVSPTEGSSEAMDSDCVENGESTNPVLMEVAANGIVNDVSTTNVVEKSVYAKVKETLRTFNKYYLHFVQKGDAPEKDGRQGSRRPDLKAISKMMETNAILYPEKRFGPIPGVDVGHQFFSRAEMVAVGFHSHWLNGIDYMGQSYNRREYSGYTFPLAVAIVLSGQYEDDLDNSEDVVYTGQGGNNLLGNKRQVQDQVMERGNLALKNCMEQCVPVRVIRGHKSANSYVGKVYTYDGLYKVVQYWAEKGVSGFTVFKYRLKRLEGQPILTTNQVQYARGRVPNSISEIRGLVCEDISGGQEDIPIPATNLVDDPPFAPTGFTYCNSIKVSKSVKLPSNAIGCNCKGTCTDPRTCSCAMLNGSDFPYVHRDGGRLIEAKDVVFECGPKCGCGPGCLNRTSQRGLKYRLEVFRTPKKGWAVRSWDYIPSGAPICEYKGILMRTDELDNVSDNNYIFDIDCLQTMRGLDGRERRFRDVSMPTSTDDQKSESVPEFCIDAGSTGNVARFINHSCEPNLFVQCVLSSHHDAKLARVMLFAADNIPPLQELTYDYGYTLDSVMGPDGKIKQMLCFCGAADCRKRLL* 702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g1322 701 Gene3D - 212 402 IPR036987 -
Vvi14g1322 701 MobiDBLite consensus disorder prediction 15 40 - -
Vvi14g1322 701 Pfam SAD/SRA domain 227 387 IPR003105 -
Vvi14g1322 701 ProSiteProfiles YDG domain profile. 229 383 IPR003105 -
Vvi14g1322 701 MobiDBLite consensus disorder prediction 15 138 - -
Vvi14g1322 701 CDD SET_AtSUVH-like 441 672 - -
Vvi14g1322 701 MobiDBLite consensus disorder prediction 41 83 - -
Vvi14g1322 701 Pfam Pre-SET motif 418 518 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Vvi14g1322 701 ProSiteProfiles SET domain profile. 526 671 IPR001214 GO:0005515
Vvi14g1322 701 SMART set_7 526 677 IPR001214 GO:0005515
Vvi14g1322 701 SMART preset_2 414 510 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Vvi14g1322 701 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 35 694 - -
Vvi14g1322 701 SUPERFAMILY SET domain 410 678 IPR046341 -
Vvi14g1322 701 ProSiteProfiles Post-SET domain profile. 685 701 IPR003616 -
Vvi14g1322 701 SMART G9a_1 224 387 IPR003105 -
Vvi14g1322 701 ProSiteProfiles Pre-SET domain profile. 461 523 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Vvi14g1322 701 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 84 701 IPR025794 GO:0016571
Vvi14g1322 701 SUPERFAMILY PUA domain-like 211 406 IPR015947 -
Vvi14g1322 701 Gene3D SET domain 409 701 IPR046341 -
Vvi14g1322 701 Pfam SET domain 537 671 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi14g1322 Vvi-Chr14 24836872 24881484 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi14g1322 215 700 EF-hand Containing Proteins AT5G13960 67.551 0.0 723
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vvi14g1322 SAD_SRA 1.6e-51 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g1322 K11420 - vvi:100265173 1404.42