LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi14g1319	ATGAAAGATAGCACCCAAAGCAAATTCGGATGCGTACAAGACCAACTCAAGAAGCAAGAAAGGGAGCCAGCCAACCCAGGAGTTTTAAAGGTGGATCATAAGCATGGCAAGAGATCTGTTCCTTCCGGGGCATCGGAAGAGAAAGAGGAAGATCCCATCTTCCCTGTTTACCCAGCAGCTCAATCCCAACGAGATACCTCGGCCATGATTTCAGCCTTTGCTGATCATCAAGATATTGGCTCCTGGGACAACAGGCTGGCTCATGGGTATCATGGGCAAGGAAGCCTGTTAGCCGCATCGGTGTCTAGCATGAGGCAGCATGGCTTATCTCAACCTCCCCAAGATCGAGGAAGAGAAGGGAGCGCAAGGAAAAGACATTATAGGGGAGTAAGACAGAGACCATGGGGCAAGTGGGCAGCCGAAATCCGAGACCCGAAGAAGGCTGCTCGAGTGTGGTTAGGCACCTTTGACACGGCAGAGGCCGCAGCAGCTGCTTACGATGCTGCTGCTCTCAATTTCAAAGGAACCAAAGCTAAACTCAACTTTCCTGAAAGAGTTCAAGGGGGATCTCACTCTCACTCTCACTCTCCCTCTCCCTCTCATTACTCGAGACCCATAACTGTTCCTCCACCTTCACCTCCACCTCCACCTCCACCTCCACCTCCACCTCAACCATATTCTCCTTCTCCTCCTTTTGCACCTCCTTTTCCGGTACAGGAAGAATTCCCCAACCTTTTACAGTACGCCCAGCTGCTTTGTAGCAATACTGATGATGATTTAAGCAATGCTACTTCAGCTCTGTATGATCAACAAACTTTTGCCTCTCAGGGTTTGTCAAATCCCTCGGCAGTATCTCAACAACATCGACAAGTTGAAGAAGAGCTTCTGAGGGTTTCTTCGGACATGGGAAGTTCTTATGGTACTGATTTTTTTGGGCAGGGAAGAGACTTTGATAACAGTAACCCATAG	969	0.4923	MKDSTQSKFGCVQDQLKKQEREPANPGVLKVDHKHGKRSVPSGASEEKEEDPIFPVYPAAQSQRDTSAMISAFADHQDIGSWDNRLAHGYHGQGSLLAASVSSMRQHGLSQPPQDRGREGSARKRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEAAAAAYDAAALNFKGTKAKLNFPERVQGGSHSHSHSPSPSHYSRPITVPPPSPPPPPPPPPPPQPYSPSPPFAPPFPVQEEFPNLLQYAQLLCSNTDDDLSNATSALYDQQTFASQGLSNPSAVSQQHRQVEEELLRVSSDMGSSYGTDFFGQGRDFDNSNP*	323

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vvi14g1319	322	MobiDBLite	consensus disorder prediction	300	322	-	-
	Vvi14g1319	322	MobiDBLite	consensus disorder prediction	98	132	-	-
	Vvi14g1319	322	CDD	AP2	126	184	IPR001471	GO:0003700\|GO:0006355
	Vvi14g1319	322	MobiDBLite	consensus disorder prediction	1	54	-	-
	Vvi14g1319	322	MobiDBLite	consensus disorder prediction	14	53	-	-
	Vvi14g1319	322	MobiDBLite	consensus disorder prediction	203	238	-	-
	Vvi14g1319	322	SUPERFAMILY	DNA-binding domain	126	184	IPR016177	GO:0003677
	Vvi14g1319	322	MobiDBLite	consensus disorder prediction	184	239	-	-
	Vvi14g1319	322	MobiDBLite	consensus disorder prediction	187	202	-	-
	Vvi14g1319	322	Pfam	AP2 domain	126	175	IPR001471	GO:0003700\|GO:0006355
	Vvi14g1319	322	SMART	rav1_2	126	189	IPR001471	GO:0003700\|GO:0006355
	Vvi14g1319	322	Gene3D	AP2/ERF domain	125	185	IPR036955	GO:0003700\|GO:0006355
	Vvi14g1319	322	PANTHER	DNA-BINDING DOMAIN	97	268	IPR044808	GO:0003700\|GO:0009873
	Vvi14g1319	322	FunFam	Ethylene-responsive transcription factor 2	125	184	-	-
	Vvi14g1319	322	PRINTS	Ethylene responsive element binding protein signature	149	165	IPR001471	GO:0003700\|GO:0006355
	Vvi14g1319	322	PRINTS	Ethylene responsive element binding protein signature	127	138	IPR001471	GO:0003700\|GO:0006355
	Vvi14g1319	322	ProSiteProfiles	AP2/ERF domain profile.	126	183	IPR001471	GO:0003700\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vvi14g1319	Vvi-Chr14	24815028	24818030	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vvi14g1319	111	268	AP2-EREBP Transcription Factor Family	AT5G13330	56.604	3.55e-43	146

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Vvi14g1319		AP2	2.1e-14	CL0081

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vvi14g1319	-		-	vvi:100266913	438.728