Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g1312 ATGGCGGTTCTGTGGATTCTTGTTTTTTCCTTGTCGTTCGCTTTCTCTCACGCTGTGGCTTCCGTTTCGAGAGATGCAATGTTGCTTCTTAGCTTTAAGAGCTCCATTTCTCTTGATCCAGCTAGTCTTCTCTCTGACTGGAATTTGTCTACGAATCATTGCCACTGGTATGGAGTCACTTGCGATCGATTCTCTGGCAGAGTAGTAGCTTTGAGCATCACTGGCAGTATGAGTTCTTCTGGATTGCCGGAATTGGGTTACAATTTCACCGGCAAGGACTCTGTGCTCGTCGGAACCCTATCGGCTTCCATTGGAGGCTTATCAGAGCTTCGCATTTTATCTATTCCTCATAACGTGTTCTCCGGTGAGATTCCCGCGGATGTTGCGAAACTTCATAAGCTTGAAATTCTTCAACTTCAAGGAAACAACTTCTCGGGGCGAATTCCTGACCAGATAAGCTCTCTTTTGTCTCTACGCATGCTTAATTTGTCTTACAATGTGGTATCTGGTCAGATTCCGGACAAATTGATCGGTTCTGGAAAGTTAAGAGTCATTGATTTATCGAATAATCAGCTCTCTGGTGAAATTGGAGTTGACAGGTTTAGTGAATGCGAGTTTCTTGTTCATTTGAAGCTTTCTCACAACTTTCTGACAGATAATATTCCGGCGGAGATCGGAAAATGCTGGAATTTGAGGACTCTTTTGCTTGACAGTAATATTTTTGAAGGTCGGATTCCGGCTGAGATTGGCCGTATCTCCCAACTTCGGGTCTTGGATGTTTCTAGGAACAGTCTCACCGACGGGATTCCAAAGGAGCTAGCGAATTGCCGGGAGCTGTCAGTTATAGTATTGACAAATTTAGATGATTTCAGTTCTGCTGAGGACAACTTAGCCGACAGTTCTAGTGGAGAATTCAATGCTTTTATGGGAGGTGTTCCTTATGAGCTATTGCTGCTTCCCAAGCTTCAGATTTTTTGGGCACCTAGAGCAAATCTTGGTGGACGGTTGCCTAGTAATTGGAGTGATTCATGTTCACTGCGAGCACTCAATTTGGGGCAGAATTACATTAGTGCTGCGGTACCGGAAAGTATGGGAAAATGCAAGAACCTTACCTTTTTGGATTTGAGTTCAAATGTTTTGGAGGGATACCTCCCTTTTCAGTGGCTCTTTCCATGTATGGTGTACTTTAATATCAGTCGAAACATGTTAACTGGTGTACTTCCAAGGTTTGGAAAGGAGAGTTGTCACAGCATCATGGTCTCTTATGGACAAGCTCCTATTTTCTTAGATGTGGAAGATATTCAGAATGCTTACTCTAACATTCCTGTTTGGGGTTATCAGATGAGCACCATTTTTGGGTCGCTGGTGGATGAGAATTTAGTATTCATTCATGACTTTAGTTGGAATAGATTCATTGGTCCAATACCTTCTTTCTCAATAGGAGGAGACTTCCTAGCAACAAACCATAAACCCTCGTACAAATTGTTCCTGAACAATAATGCGCTCAATGGGTCTCTTCCTGGTGAGCTGGTTTCAAACTGTAATGATCTGCAGACCTTTTCAGTTAACTTGAGCACCAACCAGATATCAGGTGGAATTTATCCGGGGTTGCTTCTTGATTGTTTACAACTGAAGGAGTTTGAAGCAGCACACAATCAGATAAGTGGATCAATCGGTCCTGCTTTTGGCAATCTGAAGATGCTTCAACGGCTTGACTTACGAGGAAACAGGCTGTCTGGATCTCTCCCTGGTCAGTTGGGGATGTTGAAGGATCTGAAATGGATTCTTCTTGGAGGGAACAATTTAACTGGAGAAATTCCATCTCAGCTAGGTCAGTTGACATCTCTTATTGTTTTGGATCTGTCTCGAAATGGTCTAACAGGTTCTATACCTGAAAATTTGACAAATGCCACAAATCTTGAAATTGTGTTGCTCAATCACAATAGGCTCGTTGGGGAAATACCTTCATCTTTCTCGACCCTTTCCAGTCTTACCGAACTGGATGTCTCTTTCAATAACCTTTCGGGTCATATACCCCAGCTTCAACACCTGAGTAATTGTGACTTCTTTAAAGGGAATCAATATCTGCATCCATGCCTGGATCCATACTCAGCGCCACCAGATAGGCTTCCAGATCTCCTTGAGGTCCACAAAGAGTACAGGCAGAGTAAATTGAAGTCTTTTGTGATTGCAATGGTAGCTTCTGCTTCTTTCATACTTTTTATTCTCTTAGTAATGGTTCTTGTCCTTATTCTTGGGAGGAGAAAGATTAGTAGACTCACTAGCCTGAGAAGGAAAGTAGTGGTGACTTTTGCAGATGCTCCAACCGAAGTGAATTATGATAATGTGGTTAGAGCAACTGGGAATTTCAGCATCAGGAACCTAATTGGTACAGGTGGCTTTGGGTCAACTTACAAGGCAGAATTGGTCCCAGGTTTCCTAGTGGCTGTGAAAAGGCTCTCAATAGGCAGATTTCAAGGCCTTCAACAATTTGATGCAGAGATCAAAACGTTGGGAAGAATTCGCCACAAGAACCTGGTTACTCTTATCGGATATCATGTGGGTGAAACTGAGATGTTCTTGATTTATAATTTTCTTTCTGGAGGAAATCTTGAAACTTTCATACATGATCGATCGGGGAAAAATGTACAGTGGCCAGTGATCCACAAAATAGCCCTTCACATAGCACAGGCCCTTGCTTACCTTCACTACTCCTGCGTTCCTCGGATAGTTCATCGAGATATCAAACCTAGCAACATACTGCTGGATGAGGAACTTAACGCCTACCTTTCAGACTTTGGGTTGGCCAGGCTTCTTGAAGTTTCCGAGACCCATGCCACTACAGATGTCGCAGGCACATTCGGGTATGTGGCACCAGAATATGCAACCACATGCAGGGTTTCTGACAAAGCCGATGTTTATAGCTTCGGTGTTGTGCTCCTAGAACTGATGTCAGGGAAGAAGTCCCTGGATCCATCATTCTCTGAGTATGGTAATGGGTTCAACATTGTTGCATGGGCCAAGTTGCTGATCAAGGAGAGACGTTCTTCAGAGCTTTTCTCTCCAGAATTGTGGGAAGTTGGGCCCAAGGAGAATTTGTTGGGGATGTTAAAACTTGCATCAACTTGCACAGTAGAGTCTATTTCCATTCGGCCATCAATGAGACAGGTTGTTGAGAAACTGAAACAGCTGCGTTCCTGA 3201 0.4342 MAVLWILVFSLSFAFSHAVASVSRDAMLLLSFKSSISLDPASLLSDWNLSTNHCHWYGVTCDRFSGRVVALSITGSMSSSGLPELGYNFTGKDSVLVGTLSASIGGLSELRILSIPHNVFSGEIPADVAKLHKLEILQLQGNNFSGRIPDQISSLLSLRMLNLSYNVVSGQIPDKLIGSGKLRVIDLSNNQLSGEIGVDRFSECEFLVHLKLSHNFLTDNIPAEIGKCWNLRTLLLDSNIFEGRIPAEIGRISQLRVLDVSRNSLTDGIPKELANCRELSVIVLTNLDDFSSAEDNLADSSSGEFNAFMGGVPYELLLLPKLQIFWAPRANLGGRLPSNWSDSCSLRALNLGQNYISAAVPESMGKCKNLTFLDLSSNVLEGYLPFQWLFPCMVYFNISRNMLTGVLPRFGKESCHSIMVSYGQAPIFLDVEDIQNAYSNIPVWGYQMSTIFGSLVDENLVFIHDFSWNRFIGPIPSFSIGGDFLATNHKPSYKLFLNNNALNGSLPGELVSNCNDLQTFSVNLSTNQISGGIYPGLLLDCLQLKEFEAAHNQISGSIGPAFGNLKMLQRLDLRGNRLSGSLPGQLGMLKDLKWILLGGNNLTGEIPSQLGQLTSLIVLDLSRNGLTGSIPENLTNATNLEIVLLNHNRLVGEIPSSFSTLSSLTELDVSFNNLSGHIPQLQHLSNCDFFKGNQYLHPCLDPYSAPPDRLPDLLEVHKEYRQSKLKSFVIAMVASASFILFILLVMVLVLILGRRKISRLTSLRRKVVVTFADAPTEVNYDNVVRATGNFSIRNLIGTGGFGSTYKAELVPGFLVAVKRLSIGRFQGLQQFDAEIKTLGRIRHKNLVTLIGYHVGETEMFLIYNFLSGGNLETFIHDRSGKNVQWPVIHKIALHIAQALAYLHYSCVPRIVHRDIKPSNILLDEELNAYLSDFGLARLLEVSETHATTDVAGTFGYVAPEYATTCRVSDKADVYSFGVVLLELMSGKKSLDPSFSEYGNGFNIVAWAKLLIKERRSSELFSPELWEVGPKENLLGMLKLASTCTVESISIRPSMRQVVEKLKQLRS* 1067
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g1312 1066 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 459 703 - -
Vvi14g1312 1066 Gene3D Ribonuclease Inhibitor 464 697 IPR032675 -
Vvi14g1312 1066 Gene3D Ribonuclease Inhibitor 90 288 IPR032675 -
Vvi14g1312 1066 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 754 865 - -
Vvi14g1312 1066 FunFam Leucine Rich Repeat family protein, expressed 67 289 - -
Vvi14g1312 1066 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 866 1066 - -
Vvi14g1312 1066 Pfam Leucine rich repeat 133 192 IPR001611 GO:0005515
Vvi14g1312 1066 ProSitePatterns Serine/Threonine protein kinases active-site signature. 910 922 IPR008271 GO:0004672|GO:0006468
Vvi14g1312 1066 ProSitePatterns Protein kinases ATP-binding region signature. 796 818 IPR017441 GO:0005524
Vvi14g1312 1066 Pfam Leucine rich repeat N-terminal domain 24 62 IPR013210 -
Vvi14g1312 1066 Gene3D Ribonuclease Inhibitor 17 89 IPR032675 -
Vvi14g1312 1066 SUPERFAMILY Protein kinase-like (PK-like) 770 1061 IPR011009 -
Vvi14g1312 1066 Gene3D Ribonuclease Inhibitor 291 419 IPR032675 -
Vvi14g1312 1066 Pfam Protein kinase domain 792 1058 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi14g1312 1066 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 306 1063 - -
Vvi14g1312 1066 SUPERFAMILY RNI-like 97 409 - -
Vvi14g1312 1066 Pfam Leucine Rich repeat 662 675 IPR001611 GO:0005515
Vvi14g1312 1066 SUPERFAMILY L domain-like 309 687 - -
Vvi14g1312 1066 ProSiteProfiles Protein kinase domain profile. 790 1064 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi14g1312 1066 ProSiteProfiles Leucine-rich repeat profile. 663 685 IPR001611 GO:0005515
Vvi14g1312 1066 CDD STKc_IRAK 796 1064 - -
Vvi14g1312 1066 SMART serkin_6 790 1064 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi14g1312 1066 Pfam Leucine Rich Repeat 254 276 IPR001611 GO:0005515
Vvi14g1312 1066 SMART LRR_typ_2 661 691 IPR003591 -
Vvi14g1312 1066 SMART LRR_typ_2 613 637 IPR003591 -
Vvi14g1312 1066 SMART LRR_typ_2 565 589 IPR003591 -
Vvi14g1312 1066 SMART LRR_typ_2 131 155 IPR003591 -
Vvi14g1312 1066 SMART LRR_typ_2 252 276 IPR003591 -
Vvi14g1312 1066 Gene3D Phosphorylase Kinase; domain 1 752 865 - -
Vvi14g1312 1066 Gene3D Transferase(Phosphotransferase) domain 1 866 1065 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi14g1312 Vvi-Chr14 24736030 24739230 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi14g1312 4 1065 Receptor kinase-like Gene Family AT3G02130 45.767 0.0 857
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XV Vvi14g1312 Pkinase 1e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g1312 - - vvi:100258356 2076.98