Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g1310 ATGTCAAGGACTCTTGCAGCAATTCTAGGAGGTGCTGCAGGAGCCGTGGCATTGGTGGGAATAGTAATTCTAATAATATGGTTCTGCCTATCTCATAATAGGAGCGTTTCGAGAACTTCAGAGACAGGATCTTCTGATCCCTCCGTTCAAGTTGGAAGAAATGTTGGAGTTGAGTTGGCATTACGAGAAGCAAGGCACTTTGAGATGGCCGAATTGTCTCTGGCCACAAAAAATTTTAGCGACATAAGTTTGATTGGGGAGGGAAAATTTGGTGAGGTATACAAGGGTTTGCTTCATGATGGGATGTTTGTAGCAATCAAAAAGCGGTTTGGAGGGCCTAGTCAGGACTTCGTTGATGAGGTACGCTATCTCTCAGCTATTGAGCATCGGAATCTTGTGACTCTTCTGGGTTACTGCCAAGAAAATGGTCAACAGTTCCTTATCTATGAGCATATTCCTAGTGGAAGTATTTCCAGTTACTTATATGGCACTGCTGCTCAGGTTTCACAGGAGAAGCTAGAATTCAAGAATAGGCTTCAAATAGCTCTAGGGGCAGCTAAAGGTTTGGCTCATCTCCACACCCTAAGTCCCCGTTTGGTGCATAAGGATTTCAAAACAGCGAATGTACTGGTTGATGAAAATTTCATTCCTAAGGTTGCAGATGCAGGACTCCGCAATTTTCTTGGAAGAATTGATATTGCAGGCCCATCTTCTCAAGTGGTGGCTGATGAGATATTCCTTGCTCCAGATGCAGGGTAA 759 0.4401 MSRTLAAILGGAAGAVALVGIVILIIWFCLSHNRSVSRTSETGSSDPSVQVGRNVGVELALREARHFEMAELSLATKNFSDISLIGEGKFGEVYKGLLHDGMFVAIKKRFGGPSQDFVDEVRYLSAIEHRNLVTLLGYCQENGQQFLIYEHIPSGSISSYLYGTAAQVSQEKLEFKNRLQIALGAAKGLAHLHTLSPRLVHKDFKTANVLVDENFIPKVADAGLRNFLGRIDIAGPSSQVVADEIFLAPDAG* 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g1310 252 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 14 250 IPR047117 -
Vvi14g1310 252 Gene3D Transferase(Phosphotransferase) domain 1 152 250 - -
Vvi14g1310 252 Pfam Protein tyrosine and serine/threonine kinase 84 226 IPR001245 GO:0004672|GO:0006468
Vvi14g1310 252 FunFam Protein kinase superfamily protein 43 151 - -
Vvi14g1310 252 Gene3D Phosphorylase Kinase; domain 1 42 151 - -
Vvi14g1310 252 ProSitePatterns Serine/Threonine protein kinases active-site signature. 199 211 IPR008271 GO:0004672|GO:0006468
Vvi14g1310 252 ProSitePatterns Protein kinases ATP-binding region signature. 85 108 IPR017441 GO:0005524
Vvi14g1310 252 SUPERFAMILY Protein kinase-like (PK-like) 61 250 IPR011009 -
Vvi14g1310 252 ProSiteProfiles Protein kinase domain profile. 79 252 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi14g1310 Vvi-Chr14 24706514 24708626 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi14g1310 15 250 Receptor kinase-like Gene Family AT5G56890 37.879 1.88e-44 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXa Vvi14g1310 PK_Tyr_Ser-Thr 1.4e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g1310 - - vvi:100246288 458.373