Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g1305 ATGTTAAGTTCAGTTGATAAATGGGAATATAACAATTCAATTGCAAAGATAGTTTTGTCGCAACAAATTTCTCCCATAGAGATGTTATCCGGTTTAGGTTTACGCCCGAAATCTTTTCCTGCTCCGCTGCTGCTTGACTTTGGTAGGAGGGTTTCAGCTTCTGCTAAAGTTTCTACCAAGATGGTTCTTCCAAACGATATTGATTTGCTGAACCCGCCGGCGGAGCTGGAGAAGAGGAAGCACAAACTCAAACGCCTTGTTCAGTCCCCCAATTCCTTCTTCATGGATGTGAAATGCCAAGGCTGCTTCAACATAACCACTGTTTTTAGCCACTCCCAGACTGTGGTAGTTTGCGGTAACTGCCAGTTAGTGCTGTGCCAACCAACAGGTGGGCGTGCCAGGCTCACGGAGGGCTGCTCTTTCAGGAAGAAGGGGGACTAA 441 0.4671 MLSSVDKWEYNNSIAKIVLSQQISPIEMLSGLGLRPKSFPAPLLLDFGRRVSASAKVSTKMVLPNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQLVLCQPTGGRARLTEGCSFRKKGD* 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g1305 146 Gene3D - 65 145 IPR023407 -
Vvi14g1305 146 Hamap 30S ribosomal protein S27e [rps27e]. 84 144 IPR000592 GO:0003735|GO:0005840|GO:0006412
Vvi14g1305 146 ProSitePatterns Ribosomal protein S27e signature. 98 130 IPR000592 GO:0003735|GO:0005840|GO:0006412
Vvi14g1305 146 Pfam Ribosomal protein S27 90 144 IPR000592 GO:0003735|GO:0005840|GO:0006412
Vvi14g1305 146 PANTHER 40S RIBOSOMAL PROTEIN S27 49 146 IPR000592 GO:0003735|GO:0005840|GO:0006412
Vvi14g1305 146 SUPERFAMILY Zn-binding ribosomal proteins 90 144 IPR011332 GO:0006412
Vvi14g1305 146 FunFam 40S ribosomal protein S27 61 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi14g1305 Vvi-Chr14 24650501 24651648 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi14g1305 61 146 Cytoplasmic Ribosomal Protein Gene Family AT3G61110 93.023 3.39e-58 174
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g1305 K02978 - nnu:104613446 187.193