Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g1303 ATGAATCCATCTACGTCGAAGAGCAAAAAGAAGCAAACGCAACAGCAGGAAACGAGTGGGAGGTTTCTTGGTGTTCGAAGGAGGCCGTGGGGGAGATACGCGGCGGAGATACGAGACCCTTCTACCAAAGAGAGGCATTGGCTGGGCACCTTCGACACTGCGGAGGAAGCCGCCTTGGCCTACGACAGAGCCGCACGCTCAATGCGTGGCTCTCGCGCTCGCACCAACTTCGTCTACTCCGACATGCCACCGGGCTCCTCCGTCACCTCCATCATCTCCCCTGACGAGTCCCTCCCCGACTTCTCCTCCCACTTCGTCCCTCCCACCACTCAACCCAACCCCAATCCCAACCTCTTCTTCAATCCCACTGAATGCCATCAATTCGCATTCCAGGGACAGTTCCCCACGGAAACCAACTCCTGGGATTATTCCAATCTTTACCAGGAACAGCCTCTCGTCGACAACATGAACGGCACCACCACCACCACCAACAACCAATTCTACAATGCAAACGACCTCCCCCCATTCCCTTCCCAGGTTTCTGATCAGCTCCCGAGTTCAGGTTTCGAAATGGAGCAGGCGACATGGGGCGACTCAACCAGCCTCGCGGGGTTTTCGGAGCAGAGGACATCCCCAAATGAGTTTGACTCAGCGGGGGGCGGGTCTTACTTGGGATTCGATTCCACCCAGTACGTGCACAGCCCACTTTTCGGTCGGATGCCTCCCGTTTCCGACACCCCTCCGGATGGTTTTGATCTGGGTTCTTCCTCGTATTTCTTCTAA 783 0.5619 MNPSTSKSKKKQTQQQETSGRFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEEAALAYDRAARSMRGSRARTNFVYSDMPPGSSVTSIISPDESLPDFSSHFVPPTTQPNPNPNLFFNPTECHQFAFQGQFPTETNSWDYSNLYQEQPLVDNMNGTTTTTNNQFYNANDLPPFPSQVSDQLPSSGFEMEQATWGDSTSLAGFSEQRTSPNEFDSAGGGSYLGFDSTQYVHSPLFGRMPPVSDTPPDGFDLGSSSYFF* 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g1303 260 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 8 140 - -
Vvi14g1303 260 MobiDBLite consensus disorder prediction 1 21 - -
Vvi14g1303 260 SUPERFAMILY DNA-binding domain 22 79 IPR016177 GO:0003677
Vvi14g1303 260 Gene3D AP2/ERF domain 21 79 IPR036955 GO:0003700|GO:0006355
Vvi14g1303 260 Pfam AP2 domain 24 70 IPR001471 GO:0003700|GO:0006355
Vvi14g1303 260 SMART rav1_2 21 84 IPR001471 GO:0003700|GO:0006355
Vvi14g1303 260 CDD AP2 21 77 IPR001471 GO:0003700|GO:0006355
Vvi14g1303 260 ProSiteProfiles AP2/ERF domain profile. 21 78 IPR001471 GO:0003700|GO:0006355
Vvi14g1303 260 PRINTS Ethylene responsive element binding protein signature 22 33 IPR001471 GO:0003700|GO:0006355
Vvi14g1303 260 PRINTS Ethylene responsive element binding protein signature 44 60 IPR001471 GO:0003700|GO:0006355
Vvi14g1303 260 MobiDBLite consensus disorder prediction 1 25 - -
Vvi14g1303 260 FunFam Ethylene-responsive transcription factor 2 21 79 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi14g1303 Vvi-Chr14 24626255 24627037 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi14g1303 1 252 AP2-EREBP Transcription Factor Family AT5G13910 48.828 1.70e-58 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vvi14g1303 AP2 2.7e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g1303 K09286 - vvi:100244684 500.36