Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g1301 ATGGAATCAAAAGTCTCTTTGCTACTAAAGCATGAAAAGGTAGCTTTTCAGTTTTCAGGAGATACCATGAATATCTGTGGCTACAAGAGAAAATTTGAGGCTATAGTCTCCCCAGCAGACACTACAAGCCAGCTTTCTCCATGCACTCCTGCACAGTGGCTCCAAACTGTCATTTGTTCACTTCCTGCAAAACCATCTGCAGAATTGGAGAGGTTCATGTCATCATGTGATGGGAATGTAACTGATAAGGTGATATGCAGGGCCAGCATAATATTGGCGGCCATATTTCCCAGGGGTTGTAATGGAAACCGATGTATGAGTTCTGGTTTGCATAATAGCAGCTTGATGAATAGTGGGTGGATAGAGCAGAGACAAGAGGAAGCTCTGAAATTATACTATAAGGTTTTGGAATCCATTTGTGAATCTGAAGCTCAAAAGCTGCAGGGAAGGAACTTGACCCAGCTGTTAACTAATGAGAGGTTCCACAGATGCATGCTAGCATGTTCAGCTGAACTGGTTTCAGCAGCTCATATGGGAGTTAGGATGCTGTTTCCTAGAGTATTGGAGAGAATTGGTATAACTGCATTTGATCTGAGCAGAGTGACTGAAAGTTTCATTAAACATGAAGGGTCACTTCCAAGAGAATTGAAGAGGTACCTGAATTCTATGGAAGAGCAAATGTTGGAGAGCATGGTATGGGGAAAAGGTTCCTCCTTATACAATTCTCTGATTGTTGCAAGACCATCCCTTGCTGAAGAAATACGTCGGCTCGGCCTACTCGCAAAGCCTATGCCATCACTGGATGCAATTGCTGCAGATAATCTTCTTTCATATGGAGGCTTGCCTCACCCACCTGGCCAGAATGGAAATGCTAGGTCTTCAGAGAAAGTATCCAGTGAACTACACAACTCCTCTGCATTACCAATGAAGGAACATTCACCTGCTCTTAATGATCAAAAGCCAAGGAAGCCACCACCATCACCCCCTCTGCTGTCTGCATTTGCCAGTCCAACACAGCCAAATCCAGGAGGCAGGGGCTCTACTTGCTTGGACACAGGGATTAAGCTGCTCTTTGAGAAGGTGGCAAAGTTAGCAGCAGTACGAATCAATCATCTGACTCTGAGGCTAAAACCGTTGCAGCCGATCAGAGAGATTGTCTATGGCTTATTTCATCGGATCCTAAATCAAAAAACTGCCCTTTGTTTCAACCGGCATGTTGACCAGATCATCCTCTGCTGTTTCTACATCATTGTAAAGGACTCTAAACTAGAACTGACCTTTAAGGAGATCAAAGACAGCTATGTGAAGCAACCACAACATGGACCTCAAGTGGTCAGCCATGTGTTTGTTAACAGGTCACCAGCACATGGGAATGGGAAAAACAGGGAGGATCACATTGATATTGTCGCATTTTACAATGAAATCTTCCTCTGGGCTGTAAAGCCTTTACTGGTTGAGGTTAGACCTGCCAAAGTGTCTGACCAAGCTCCTGATGAGGCTGCAAATAATGCTGATGATGAGTGTCCCGGTTCACCTCGGATTTCTCCGTTTCCAAGCATTCCTGATTTATCTCCGAAGAAAGTCTCTCCCTCGCACAATGTCTACCTATCCTCACTGCAACCATCAAAGAAGGAAGCATTGATCTCAAGGGGTGCTAAAAGCTATTATGCCTGTTTTGGGGAGAGCACTCGTGCTTACCAGAGCCCCTCCAAAGATCTCACTACAATTAACAACTGTTTGCGCAGCAGGCCAAAACTGAGACGCCGTCTGGATGTAGAGTTTGTTAGTCACTCTGAAGTGGCCAGGGCCCTCTTCCATCATCAATCAGCATGA 1833 0.4501 MESKVSLLLKHEKVAFQFSGDTMNICGYKRKFEAIVSPADTTSQLSPCTPAQWLQTVICSLPAKPSAELERFMSSCDGNVTDKVICRASIILAAIFPRGCNGNRCMSSGLHNSSLMNSGWIEQRQEEALKLYYKVLESICESEAQKLQGRNLTQLLTNERFHRCMLACSAELVSAAHMGVRMLFPRVLERIGITAFDLSRVTESFIKHEGSLPRELKRYLNSMEEQMLESMVWGKGSSLYNSLIVARPSLAEEIRRLGLLAKPMPSLDAIAADNLLSYGGLPHPPGQNGNARSSEKVSSELHNSSALPMKEHSPALNDQKPRKPPPSPPLLSAFASPTQPNPGGRGSTCLDTGIKLLFEKVAKLAAVRINHLTLRLKPLQPIREIVYGLFHRILNQKTALCFNRHVDQIILCCFYIIVKDSKLELTFKEIKDSYVKQPQHGPQVVSHVFVNRSPAHGNGKNREDHIDIVAFYNEIFLWAVKPLLVEVRPAKVSDQAPDEAANNADDECPGSPRISPFPSIPDLSPKKVSPSHNVYLSSLQPSKKEALISRGAKSYYACFGESTRAYQSPSKDLTTINNCLRSRPKLRRRLDVEFVSHSEVARALFHHQSA* 611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g1301 610 PANTHER RETINOBLASTOMA-ASSOCIATED PROTEIN RB -RELATED 48 606 IPR028309 GO:0006357|GO:0051726
Vvi14g1301 610 SMART RB_A_2 49 243 IPR002720 GO:0005634|GO:0051726
Vvi14g1301 610 MobiDBLite consensus disorder prediction 281 346 - -
Vvi14g1301 610 Pfam Retinoblastoma-associated protein A domain 48 243 IPR002720 GO:0005634|GO:0051726
Vvi14g1301 610 MobiDBLite consensus disorder prediction 319 335 - -
Vvi14g1301 610 SUPERFAMILY Cyclin-like 352 519 IPR036915 -
Vvi14g1301 610 Gene3D - 289 520 - -
Vvi14g1301 610 FunFam Retinoblastoma-related protein 1 45 233 - -
Vvi14g1301 610 SUPERFAMILY Cyclin-like 50 245 IPR036915 -
Vvi14g1301 610 Gene3D - 48 233 - -
Vvi14g1301 610 MobiDBLite consensus disorder prediction 494 521 - -
Vvi14g1301 610 Pfam Retinoblastoma-associated protein B domain 354 481 IPR002719 GO:0005634|GO:0051726
Vvi14g1301 610 MobiDBLite consensus disorder prediction 287 306 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi14g1301 Vvi-Chr14 24611989 24616518 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi14g1301 18 603 Core Cell Cycle Gene Families AT3G12280 53.481 0.0 605
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR RB Vvi14g1301 RB_A 1.4e-61 CL0065
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g1301 K04681 - vvi:100261814 1191.79