Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g1297 ATGAGCTTCCAAGATCTTCAAAATGGAGCAAAGCCTTCATCTTCCTCCCTCTCTCGAACTTCCCCCTCCCAGGCCGTCGCCGCCGGCATTTTTCAGATCAACACTGCCGTCGCCGGATTTCGTCGACTCGTCGATGCCATCGGAACCTCCAAGGACACTCCTGATCACCGTCAGAAGCTGCATAGTTCGAGGCAAAGGATACTGCAATTGGTAAAGGAGACCTCCGCTAAGCTCAAATCCCTCAGCGAATCCGATCATGCTGCCAATGTCAATCCAAGTAAGAAAGTTGAGGATGCAAAGCTTGCAAGAGATTTTCAAACTACCTTGCAAGAATTCCAGAAAGTTCAACAGCTTGCTGCTGAGCGCGAGTCCACTTATTCGCCTTCTGCTCCATCATCCATACCTCCAGCCTCCAGCTCTGATGAGTACTTGGCACTTAATATGGATCAGGAGAACCAGCCTTTTCTAGTAGGACAGAAGAGGCAAGAGGTACTATTTCTGGGAAATGAAATTGCATTCAATGAGGCCATAATTGAGGAGAGAGAACAGGGAATTAAGGAGATACAAGATCAAATTGGACAGGCAAATGAGATATTTAGGGACCTAGCTGTTCTAGTTCATGAGCAGGGTGTGGTCATTGATGACATTCACTCAAATATCGAGGCCTCCTCTGCCGCAACAACACAAGCTACAGCACAGCTTTCTAAGGCTTCTAAAAGTGTGAAATCTAGATCTTCATGGTGTTGGTGGGTGCTGGCAATTGTCGTGTTGGTGGTGGTCATTCTTCTTATTGTGCTTATCATATAG 807 0.4684 MSFQDLQNGAKPSSSSLSRTSPSQAVAAGIFQINTAVAGFRRLVDAIGTSKDTPDHRQKLHSSRQRILQLVKETSAKLKSLSESDHAANVNPSKKVEDAKLARDFQTTLQEFQKVQQLAAERESTYSPSAPSSIPPASSSDEYLALNMDQENQPFLVGQKRQEVLFLGNEIAFNEAIIEEREQGIKEIQDQIGQANEIFRDLAVLVHEQGVVIDDIHSNIEASSAATTQATAQLSKASKSVKSRSSWCWWVLAIVVLVVVILLIVLII* 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g1297 268 MobiDBLite consensus disorder prediction 1 20 - -
Vvi14g1297 268 SUPERFAMILY t-snare proteins 23 230 IPR010989 GO:0016020|GO:0016192
Vvi14g1297 268 FunFam Syntaxin-22 like 168 268 - -
Vvi14g1297 268 Gene3D - 12 131 - -
Vvi14g1297 268 FunFam Syntaxin-22 like 17 130 - -
Vvi14g1297 268 SMART SynN_4 11 124 IPR006011 GO:0016020
Vvi14g1297 268 Gene3D - 171 268 - -
Vvi14g1297 268 SMART tSNARE_6 170 237 IPR000727 -
Vvi14g1297 268 Pfam Syntaxin-like protein 27 126 IPR006011 GO:0016020
Vvi14g1297 268 Pfam SNARE domain 212 263 IPR000727 -
Vvi14g1297 268 CDD SNARE_Qa 178 236 - -
Vvi14g1297 268 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 175 237 IPR000727 -
Vvi14g1297 268 PANTHER SYNTAXIN 23 257 IPR045242 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi14g1297 Vvi-Chr14 24574610 24590140 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi14g1297 1 254 SNARE and Associated Proteins AT5G46860 57.752 1.01e-96 283
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g1297 - K08488 vvi:100254896 432.18