Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g1294 ATGGATCCTATGAGCGATAAAAAATTATTTAGTCCATATGAAGAGGAGCTGGACGCCAAACATCTCGAGGTCAACTGTAACTTAGAGCAAGAGTGTGATAGTCCCAAAGGTGCCCAGTTTGACTTAATGCAATCCAGACTTTCGTTAGAAAATGAAGACGACATAGATGAGGTGCCAAAAGTTGGAATGGAGTTTGAATCAGAAGATGATGCTTATGTCTTTTACAATAGGTATGCTAAGGTGGTTGGTTTTAGTGTTAGGAAAGATTTTCTAAATAAGAGTAAGGTAAATGGTACAGTGGTATCAAGAAGGTTTACTTGTTTCAAAGAAGGTTATCGGCGGAAAGATAAACGAGATATTAATGTGAAGAAACCCCGAAAGCAAACAAGAACTGGTTGCTTGGCACAGATGACCATTTCTCGTCAACCTAATGGGAAATATCGTGTCATCCATTTTGAAGCAAAACACAATCATGAGGGTGTTGGTCCACATCTAGTTCATATGCTACCTTCACAGAGGAGGTTAGCTTTTTCACAAGCTGCTGAAGCTGACCTAAAGGTGCAAGAACACCTTAAATTGGCCTCAACAAGCCGTTACAAAGATATCTGCCTCAGAGCAGTTAAGATATCATCGAGGGCTGCCGAATCCAGAAAAACATTTCTATTTGCTGTAGAAAAATTTGATGAAGTGATGCAAGAAGTGGAAAAAATATTGAAGATGAAACCCTGTGAGGAGAATCAAGTTTCTGCATTAAGCAAACAAGCTGCGAATGGAGAAGCAAGTGATGATATAGGGAATGTTGAAAAGGAGGATGTTGTCTGTGATGTAATTCAACAGAACAGCATGTCAGGATCCCTGAAAAGAAATGAGGATATGCAAACCTCCGCACCAAACACTGATTCTTCCATCCCATGTCCTCCGCCACCTTACTGTCTACTTCAGGGACTGTCGAGTCTCGAGGCCAACCCATTGATGGGTTACATGTACCAACCACCCAATCTAGTCATGTGCCAACAATCCAACCTTAGTACGTTTCAATCATCAAACTTCTACAGTAGTCAACATGACTTCCCAAGCCATATTCAGTTGCCACAGACAATGGATTGCGAAGATCAACATCCAATGTCAACCTGA 1134 0.4109 MDPMSDKKLFSPYEEELDAKHLEVNCNLEQECDSPKGAQFDLMQSRLSLENEDDIDEVPKVGMEFESEDDAYVFYNRYAKVVGFSVRKDFLNKSKVNGTVVSRRFTCFKEGYRRKDKRDINVKKPRKQTRTGCLAQMTISRQPNGKYRVIHFEAKHNHEGVGPHLVHMLPSQRRLAFSQAAEADLKVQEHLKLASTSRYKDICLRAVKISSRAAESRKTFLFAVEKFDEVMQEVEKILKMKPCEENQVSALSKQAANGEASDDIGNVEKEDVVCDVIQQNSMSGSLKRNEDMQTSAPNTDSSIPCPPPPYCLLQGLSSLEANPLMGYMYQPPNLVMCQQSNLSTFQSSNFYSSQHDFPSHIQLPQTMDCEDQHPMST* 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g1294 377 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 9 205 - -
Vvi14g1294 377 MobiDBLite consensus disorder prediction 282 300 - -
Vvi14g1294 377 Pfam FAR1 DNA-binding domain 74 159 IPR004330 -
Vvi14g1294 377 MobiDBLite consensus disorder prediction 282 304 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi14g1294 Vvi-Chr14 24542967 24544426 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Vvi14g1294 FAR1 2.4e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g1294 - K17604 vvi:104881638 758.059