Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g1288 ATGTGTTATATGTGGCCGCTATGGGTTGCTAAATCCAGATTGCCGGTTGTGCTCCCACCTCCTAAAAGATTACCTACAACTGATGAGTGCTTTTATGTTAGAGATTCTGGTGATAAATCAGGATCTCAATCTTTAACTGGCAGTCAGACTGAAATGCTTAGAAGGAGACTTGAAATTTGTGTGAGGGGAGATTTTGATTTGTCACCCATCTTATCATTCTCTTCTTGTAATCTTCCTCAGAAGCTCCTCCAGAATATAGAAGCTGCAGGATATGAAATCCCAACACCTGTCCAAATGCAAGCAATCCCAGCTGCTTTGGTTGGTAAAAACCTCCTTGTTTCAGCTGACACAGGTTCAGGGAAAACCGCTTCCTTTTTGGTTCCTATTGTTTCTCGTTGCACAAGTATTCGCCCTGACCACTCACCAAATCAGAAAAATCCATTAGCAATGGTTCTAACACCAACTAGAGAGCTCTGCATGCAGGTGGAGGAGCAAGCTAAGTTACTTGGGAAGGGTTTACCCTTTAAAACTGCACTTGTGGTTGGTGGTGATGCCATGCCTAGGCAACTCCACCGCATTCAGCAAGGAGTCGAACTAATTGTAGGAACTCCAGGCAGGCTTATTGATCTTTTATCCAAGCATGAAATAGAGCTAGATGATGTTTTTATGCTTGTTCTGGATGAGGTGGACTGCATGCTAGAGAGGGGCTTCCGTGATCAGGTAATGCAGATTTACAGGGCTCTATCACAGCCACAGGTTTTGATGTATTCTGCAACAATCTCACAAGAGGTTGAGAAGGTGGCAAGCTCGATGGCAAAGGATATAATTGTTATCTCTGTGGGGAAGTCAAACAGGCCAAATATAGCTGTGAAGCAGCTGGCCATCTGGGTGGAGTCAAAGCAGAAGAAGCAAAAGCTTTTCGACATACTAACAAGCAAGCAGCATTTTACGCCACCGGTGGTTGTATTTGTGGGTTCAAGACTTGGGGCAGATCTCCTAACTGAAGCAATAACAATCACAACTGGGTTGAAAGCTCTATCAATCCATGGGGAGAAGTCCATGAAGGAGAGGAGAGAAATCATGAGCTCATTTTTGGTGGGAGAAGTCCCTGTGATGGTGGCCACTGGTGTTTTGAGCCGGGGAGTTGATCTTCTCAGCGTGAGACAGGTGATAGTATTTGACATGCCAAATTCCATCAAGGAGTATGTCCATCAAATCGGGAGGGCATCCAGGCTGGGGGAGGAGGGTACTGCAATTCTGTTTCTGAATGAGGAGAACAGGAATCTGTTTCCTGAGTTGGTTGAAATTTTGAAATCTTCTGGAGCTGCCATTCCCCGGGAGCTTGCCAATTCACGGTACAGGTTGGGTTCAGTAAATGTTGGAAGGGGGCAGATTCGGCAGAAGAAAAGGAAGCATGGTCACTAA 1425 0.454 MCYMWPLWVAKSRLPVVLPPPKRLPTTDECFYVRDSGDKSGSQSLTGSQTEMLRRRLEICVRGDFDLSPILSFSSCNLPQKLLQNIEAAGYEIPTPVQMQAIPAALVGKNLLVSADTGSGKTASFLVPIVSRCTSIRPDHSPNQKNPLAMVLTPTRELCMQVEEQAKLLGKGLPFKTALVVGGDAMPRQLHRIQQGVELIVGTPGRLIDLLSKHEIELDDVFMLVLDEVDCMLERGFRDQVMQIYRALSQPQVLMYSATISQEVEKVASSMAKDIIVISVGKSNRPNIAVKQLAIWVESKQKKQKLFDILTSKQHFTPPVVVFVGSRLGADLLTEAITITTGLKALSIHGEKSMKERREIMSSFLVGEVPVMVATGVLSRGVDLLSVRQVIVFDMPNSIKEYVHQIGRASRLGEEGTAILFLNEENRNLFPELVEILKSSGAAIPRELANSRYRLGSVNVGRGQIRQKKRKHGH* 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g1288 474 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 102 278 IPR014001 -
Vvi14g1288 474 Pfam DEAD/DEAH box helicase 95 267 IPR011545 GO:0003676|GO:0005524
Vvi14g1288 474 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 218 428 IPR027417 -
Vvi14g1288 474 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 71 99 IPR014014 GO:0003724
Vvi14g1288 474 CDD SF2_C_DEAD 290 422 - -
Vvi14g1288 474 SMART helicmild6 331 413 IPR001650 -
Vvi14g1288 474 Gene3D - 280 453 IPR027417 -
Vvi14g1288 474 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 66 451 - -
Vvi14g1288 474 SMART ultradead3 90 293 IPR014001 -
Vvi14g1288 474 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 289 452 IPR001650 -
Vvi14g1288 474 Pfam Helicase conserved C-terminal domain 302 413 IPR001650 -
Vvi14g1288 474 Gene3D - 36 279 IPR027417 -
Vvi14g1288 474 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 56 280 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi14g1288 Vvi-Chr14 24498942 24500436 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi14g1288 67 450 Eukaryotic Initiation Factors Gene Family AT3G19760 28.792 2.02e-59 199
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g1288 K19466 - vvi:100242882 889.797