Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g1255 ATGGACTGTTCTTCTGTGATCAAATGGCGTAGTCTGTGTTTCTTTAGGGTCGTTTTTCTCATCTGGGTCTTGGGGTTTCCTCTAAAAGCTGTCGTGTCTGTTAGCTCAGACAAATCAGTTCTTCTTCAGTTCAAGGACTCGGTCTCCGACCCGTCAGGGCTACTCTCCAGCTGGAAATCCAGCAATTCGGATCACTGTTCGTGGCTCGGCGTCACCTGCGATTCGGGCTCCCGGGTTTTGTCCCTCAACGTTTCGGGTGGCTGCGGTGGAGGTAATTCCGATTTGAATGCTTTATTGGGTTCTCAATTTCCTCAGCTTCCGCTATTTGGGTATGGAATTATGAAGAACTGTACGGGTGGTAATGTGAAACTGATTGGAACATTGTCTCCTGTGATCGCAAAACTTACTGAGCTTAGGGCTTTATCGCTTCCCTACAACGAATTTGGTGGCCAGATTCCCATAGAAATTTGGGGTATGGAGAAGTTGGAGGTTCTTGATCTAGAGGGGAATTCGATGAGTGGATCGTTGCCAATTCGTTTTGGGGGTTTAAGGAATTCGCGGGTTCTGAATTTGGGGTTTAATAAGATTGCGGGGGTGATACCCAGCTCCCTTTCGAATTTAATGAGTTTGGAGATCTTGAATTTAGCGGGCAACATGGTTAATGGAACAATTCCAGGGTTCATTGGCAGCTTTAAGGAGCTGAGGGGAGTTTATTTGTCATTTAATCGGCTTGGTGGGTCTATTCCGAGTGAGATTGGGAGCAATTGCCAGAAGCTCGAGGATTTGGATTTATCAGGTAATTTATTGGTGGGTGGAATTCCAAGCAGTTTGGGGAACTGTAGTCAGCTGAGGTCAATTCTGTTGTTTTCCAATCTGTTGGAAGAGGTTATTCCAGCTGAACTTGGTCAGCTTCGGAATCTTGAAGTGTTGGATGTGTCAAGGAATAGCCTTAGTGGATCAATACCTCCTGCGCTGGGAAATTGTTCTCAATTGTCAGCACTTGTGCTCTCAAATCTATTTGATCCGCTTCTGAATATCAAGAATATGAAAGGGGACTCTAATTCAGGGCAGTTGGTTTCTGGTAATGATGATTATAATTATTTTCAAGGTACAATTCCGGTGGAGATCACTACCCTTCCAAAGCTCAGGATAATATGGGCGCCTAGGGCAACTCTCGAGGGTAGGTTTCCAAGCAATTGGGGAGCTTGCGACAGCTTGGAGGTAATAAACTTGTCTCAGAATTTTTTCACTGGAGAAATTCCAGAGGGGTTTAGTCGCTGCAAGAAGCTGCATTTTCTTGATTTAAGCTCGAATAAGTTAACTGGAGAGCTTGTTGAGAAACTTCCAGTTCCGTGTATGACTGTGTTTGATGTTAGCTGCAACCTCTTGTCTGGTCGCATCCCCAGATTTTATTATGGAAGCTGCACTCGTGTTCCTTCTAATAACCGATATGTGCTTGAATCCTCCAGCCTGTCATCTGCATATGTATCTTTTTTTGCAAACAAAGGAATCGTTGAAGCCCCTTTATTGTTTTCCAAAGGGGATGACAGTCTTTCAGTATTTCATAATTTTGCCAGTAACAACTTCAATGGTACCTTTGAGTCAATGCCAATTGCATCAGACAGACTGGGGAAGCAAACTGTTTACTCATTTCTCGCTGGTGAAAACAATCTTACTGGACCATTCCCTAGAAATTTGTTTGACAAGTGTTATGGATTGAATCGAGTGGTTGTTAATGTTAGCAACAACAGAATCTCTGGTCAGCTTCCCACAGAAATCGGTGCATTATGCAAAACTCTTACACTTTTGGATGCCTCTGGGAATCAAATTAATGGGTCTATACCCCATAGCATTGGGAATTTGGTGTCTCTTGTTGCTCTTAACTTGAGTTCAAACCATTTACAGGGTGAGATTCCAAGCAGTCTAGGCAAGATAGAGGGTCTTAAGTATCTGTCTTTAGCTGGTAATATTCTGACTGGCCCCATTCCGTCCAGCTTGGGGAATTTGCAGTCCTTAGAAGTGCTGGAACTTTCTTCGAACTCTTTATCTGGTGAGATTCCAAGAGATCTTGTGAACTTAAGATCCCTAACTGTTCTTCTGCTCAATGATAACAAGCTCTCAGGGCAGATTCCCTCAGGTCTGGCAAATGTGACAACACTCTCGGCATTCAATGTTTCCTTCAATAACTTGTCTGGGCCGCTGCCATTGAACGATAATTTGATGAAATGCAGCAGCGTCCTTGGAAATCCTCTTCTTCGGTCTTGCCGCTTGTTCTCTCTAACAGTGCCATCCTCAGATCAGCAAGGTGGGGTTGGAGATTCACAAGATTATTCCGCTTCACCTTCAGGAAGTCCAACAAGAAGTAGAAGCAGTAGTTTCAATTCAATTGAGATAGCATCCATAACATCTGCATCAGCAATTGTTTCAGTTCTTCTAGCTCTTGTTGTCCTCTTCATTTACACGAGAAAATGCAACCCAAAGTCCAGAATTCTGAGATCTGCCAGAAAGGAAGTAACAGTTTTTAATGACATAGGGGTTCCATTGACATTTGAGAACGTTGTGCGGGCAACAGGAAGTTTTAATGCAAGCAACTGCATTGGGAATGGAGGCTTTGGGGCAACATACAAAGCTGAGATCTCACCAGGAGTCTTGGTGGCAATAAAACGGCTTGCAGTTGGACGGTTCCAAGGGGTTCAACAGTTCCATGCCGAAGTCAAAACTCTTGGAAGGCTAGATCATCCCAATCTTGTGACTTTGATAGGTTATCACGCCAGTGAAACAGAGATGTTCCTCATATATAATTATTTGCCTGGTGGTAATTTGGAAAAATTTATCCAGGAGAGGTCTACAAGGGCTGTGGATTGGAGGGTACTTCACAAGATTGCTTTGGACATAGCCCGAGCACTTGCCTACCTACACGATCAGTGTGTCCCACGGGTCCTCCATCGTGATGTCAAGCCTAGCAACATACTGTTGGATGATGACTTCAATGCTTATTTATCCGACTTTGGACTGGCCAGGCTTTTGGGACCTTCAGAAACCCATGCAACCACAGGTGTTGCTGGAACTTTTGGGTATGTTGCTCCTGAGTATGCAATGACTTGCCGAGTCTCTGATAAGGCCGATGTCTACAGTTATGGGGTGGTTCTGCTTGAATTATTGTCCGACAAGAAAGCCCTAGATCCTTCGTTTTCATCATATGGGAATGGCTTTAATATTGTTGCTTGGGGCTGCATGCTCCTGCGACAGGGCCGCGCCAAGGAGTTCTTCACTGCAGGTTTATGGGATGCAGGTCCCCACGATGATTTGGTAGAAGTTTTACATTTGGCTGTTGTATGTACTGTTGATTCTCTTTCTACCAGGCCTACAATGAGGCAAGTTGTAAGACGGCTGAAGCAACTGCAACCCCCATCATGTTAG 3420 0.4447 MDCSSVIKWRSLCFFRVVFLIWVLGFPLKAVVSVSSDKSVLLQFKDSVSDPSGLLSSWKSSNSDHCSWLGVTCDSGSRVLSLNVSGGCGGGNSDLNALLGSQFPQLPLFGYGIMKNCTGGNVKLIGTLSPVIAKLTELRALSLPYNEFGGQIPIEIWGMEKLEVLDLEGNSMSGSLPIRFGGLRNSRVLNLGFNKIAGVIPSSLSNLMSLEILNLAGNMVNGTIPGFIGSFKELRGVYLSFNRLGGSIPSEIGSNCQKLEDLDLSGNLLVGGIPSSLGNCSQLRSILLFSNLLEEVIPAELGQLRNLEVLDVSRNSLSGSIPPALGNCSQLSALVLSNLFDPLLNIKNMKGDSNSGQLVSGNDDYNYFQGTIPVEITTLPKLRIIWAPRATLEGRFPSNWGACDSLEVINLSQNFFTGEIPEGFSRCKKLHFLDLSSNKLTGELVEKLPVPCMTVFDVSCNLLSGRIPRFYYGSCTRVPSNNRYVLESSSLSSAYVSFFANKGIVEAPLLFSKGDDSLSVFHNFASNNFNGTFESMPIASDRLGKQTVYSFLAGENNLTGPFPRNLFDKCYGLNRVVVNVSNNRISGQLPTEIGALCKTLTLLDASGNQINGSIPHSIGNLVSLVALNLSSNHLQGEIPSSLGKIEGLKYLSLAGNILTGPIPSSLGNLQSLEVLELSSNSLSGEIPRDLVNLRSLTVLLLNDNKLSGQIPSGLANVTTLSAFNVSFNNLSGPLPLNDNLMKCSSVLGNPLLRSCRLFSLTVPSSDQQGGVGDSQDYSASPSGSPTRSRSSSFNSIEIASITSASAIVSVLLALVVLFIYTRKCNPKSRILRSARKEVTVFNDIGVPLTFENVVRATGSFNASNCIGNGGFGATYKAEISPGVLVAIKRLAVGRFQGVQQFHAEVKTLGRLDHPNLVTLIGYHASETEMFLIYNYLPGGNLEKFIQERSTRAVDWRVLHKIALDIARALAYLHDQCVPRVLHRDVKPSNILLDDDFNAYLSDFGLARLLGPSETHATTGVAGTFGYVAPEYAMTCRVSDKADVYSYGVVLLELLSDKKALDPSFSSYGNGFNIVAWGCMLLRQGRAKEFFTAGLWDAGPHDDLVEVLHLAVVCTVDSLSTRPTMRQVVRRLKQLQPPSC* 1140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g1255 1139 Pfam Leucine Rich Repeat 258 280 IPR001611 GO:0005515
Vvi14g1255 1139 Pfam Leucine Rich Repeat 405 427 IPR001611 GO:0005515
Vvi14g1255 1139 Pfam Leucine Rich Repeat 306 328 IPR001611 GO:0005515
Vvi14g1255 1139 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 517 760 - -
Vvi14g1255 1139 SUPERFAMILY L domain-like 35 339 - -
Vvi14g1255 1139 Gene3D Ribonuclease Inhibitor 341 489 IPR032675 -
Vvi14g1255 1139 Pfam Leucine rich repeat 647 706 IPR001611 GO:0005515
Vvi14g1255 1139 Pfam Protein kinase domain 863 1061 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi14g1255 1139 Gene3D Ribonuclease Inhibitor 182 255 IPR032675 -
Vvi14g1255 1139 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 936 1138 - -
Vvi14g1255 1139 Gene3D Ribonuclease Inhibitor 36 181 IPR032675 -
Vvi14g1255 1139 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 185 251 - -
Vvi14g1255 1139 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 253 343 - -
Vvi14g1255 1139 SUPERFAMILY Protein kinase-like (PK-like) 844 1131 IPR011009 -
Vvi14g1255 1139 Gene3D Phosphorylase Kinase; domain 1 822 935 - -
Vvi14g1255 1139 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 824 935 - -
Vvi14g1255 1139 FunFam Probable LRR receptor-like serine/threonine-protein kinase RPK1 35 184 - -
Vvi14g1255 1139 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 353 482 - -
Vvi14g1255 1139 ProSitePatterns Serine/Threonine protein kinases active-site signature. 980 992 IPR008271 GO:0004672|GO:0006468
Vvi14g1255 1139 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 368 1131 - -
Vvi14g1255 1139 SMART serkin_6 860 1138 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi14g1255 1139 ProSitePatterns Protein kinases ATP-binding region signature. 866 888 IPR017441 GO:0005524
Vvi14g1255 1139 CDD STKc_IRAK 866 1134 - -
Vvi14g1255 1139 SUPERFAMILY L domain-like 225 738 - -
Vvi14g1255 1139 ProSiteProfiles Protein kinase domain profile. 860 1134 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi14g1255 1139 PRINTS Leucine-rich repeat signature 669 682 - -
Vvi14g1255 1139 PRINTS Leucine-rich repeat signature 430 443 - -
Vvi14g1255 1139 Gene3D Transferase(Phosphotransferase) domain 1 936 1136 - -
Vvi14g1255 1139 Pfam Leucine rich repeat N-terminal domain 35 74 IPR013210 -
Vvi14g1255 1139 Gene3D Ribonuclease Inhibitor 523 761 IPR032675 -
Vvi14g1255 1139 Gene3D Ribonuclease Inhibitor 256 340 IPR032675 -
Vvi14g1255 1139 SMART LRR_typ_2 159 182 IPR003591 -
Vvi14g1255 1139 SMART LRR_typ_2 693 716 IPR003591 -
Vvi14g1255 1139 SMART LRR_typ_2 669 692 IPR003591 -
Vvi14g1255 1139 SMART LRR_typ_2 231 255 IPR003591 -
Vvi14g1255 1139 SMART LRR_typ_2 621 645 IPR003591 -
Vvi14g1255 1139 SMART LRR_typ_2 183 206 IPR003591 -
Vvi14g1255 1139 SMART LRR_typ_2 304 328 IPR003591 -
Vvi14g1255 1139 MobiDBLite consensus disorder prediction 763 791 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi14g1255 Vvi-Chr14 23993049 23996468 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi14g1255 17 1139 Receptor kinase-like Gene Family AT3G02130 66.023 0.0 1403
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XV Vvi14g1255 Pkinase 4.6e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g1255 - - vvi:100254985 2149.4