Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g1251 ATGGGCATGGTCAACAGAGAGATCTCAGCCTCCATGGTACTACTGTCTCTCCTGCTCATTGCCGTGGTGGATGCAGGAAGTCATGGAGTGAATGGAGTAAGGGGAGGAGAAGAAGAAGAAGCTGATAGGATAACAGCACTTCCTGGACAGCCCAAGGTCTCTTTTCAGCAGTACTCCGGCTATGTCACTGTTAACCATGTTGCTGGTAGAGCCCTCTTCTACTGGCTCAATGAGGCTGTCCATGACCCCTTGTCCAAACCTCTGGTCATTTGGCTTAATGGAGGTCCTGGTTGCTCTTCTGTGGCGTATGGGGCATCTGAAGAAATAGGCCCATTTAGGATCAACAAGACTGCTTCAGGCCTGTACCTTAACAAGTTCTCATGGAACACTCTGGCTAATCTCTTGTTCCTGGAGACCCCAGCTGGGGTTGGCTTCTCTTACAGCAACAAATCCTCCGATCTGCTCGACACTGGCGACCGTCGCACTGCCAAGGACTCATTGGTGTTCCTGGTTCGATGGCTTGAACGATTCCCACGCTATAAGCACCGTGAAGTGTACATCAACGGTGAGAGCTATGCAGGCCATTATGTTCCTCAGCTGGCTAGAGAAATTATGGCCTACAACGCCAAATATAAGCATGCCATAAATCTCAAAGGAATAATGGTTGGCAATGCAGTAACAGACAACTACTATGACAACCTGGGAACAGTCACGTACTGGTGGAGCCACGCCATGATCTCTGATAAAACGTACCGGCAGCTCATCAATACATGTGATTTTCATCGCCAAAAGGAATCAAATGAGTGTGAATCCTTGTACAGTTATGCCATGGATCAAGAATTTGGAAACATCGATCAGTACAACATATATGCTCCTCCTTGCAACAATTCAGATGGCAGTGGCGCCACCCGCCAGACTATTCGCTTGCCTCATCGATCTCATAGGATTTTCAGGCAGATATCTGGCTATGATCCATGTACTGAAAAATATGCTGAGATTTACTACAATAGGCCTGATGTGCAGAAAGCACTGCATGCCAATACTACCAAAATTCCCTACGGATGGACTGCCTGCAGTGAGGTCCTAAACCGCAATTGGAACGACACAGCCGAATCCGTCCTCCCCATTTACCGAGAAATGATCGCGGCTGGTCTGAGAGTCTGGGTTTTCAGCGGGGATGTCGACTCGGTGGTGCCAGTCACAGCCACTAGGTATTCCCTTGCGCACCTCAAATTGGCAACCAAAATTCCATGGTATCCGTGGTATGTTAAGAAGCAGGTGGGAGGGTGGACAGAAGTGTATGAGGGGCTAACATTTGCGACAGTGAGAGGAGCAGGACATGAAGTACCACTTTTCAAGCCAAGAGCAGCACTTGAGCTATTCAAATCATTTTTGAGAGGCCTCCCTCTTCCCAAGTCTTGA 1422 0.4852 MGMVNREISASMVLLSLLLIAVVDAGSHGVNGVRGGEEEEADRITALPGQPKVSFQQYSGYVTVNHVAGRALFYWLNEAVHDPLSKPLVIWLNGGPGCSSVAYGASEEIGPFRINKTASGLYLNKFSWNTLANLLFLETPAGVGFSYSNKSSDLLDTGDRRTAKDSLVFLVRWLERFPRYKHREVYINGESYAGHYVPQLAREIMAYNAKYKHAINLKGIMVGNAVTDNYYDNLGTVTYWWSHAMISDKTYRQLINTCDFHRQKESNECESLYSYAMDQEFGNIDQYNIYAPPCNNSDGSGATRQTIRLPHRSHRIFRQISGYDPCTEKYAEIYYNRPDVQKALHANTTKIPYGWTACSEVLNRNWNDTAESVLPIYREMIAAGLRVWVFSGDVDSVVPVTATRYSLAHLKLATKIPWYPWYVKKQVGGWTEVYEGLTFATVRGAGHEVPLFKPRAALELFKSFLRGLPLPKS* 474
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g1251 473 ProSitePatterns Serine carboxypeptidases, serine active site. 187 194 IPR018202 GO:0004185
Vvi14g1251 473 Gene3D alpha/beta hydrolase 38 296 IPR029058 -
Vvi14g1251 473 FunFam Carboxypeptidase 373 467 - -
Vvi14g1251 473 SUPERFAMILY alpha/beta-Hydrolases 44 471 IPR029058 -
Vvi14g1251 473 FunFam Carboxypeptidase 322 470 - -
Vvi14g1251 473 Pfam Serine carboxypeptidase 49 467 IPR001563 GO:0004185|GO:0006508
Vvi14g1251 473 PRINTS Carboxypeptidase C serine protease (S10) family signature 173 198 IPR001563 GO:0004185|GO:0006508
Vvi14g1251 473 PRINTS Carboxypeptidase C serine protease (S10) family signature 137 147 IPR001563 GO:0004185|GO:0006508
Vvi14g1251 473 PRINTS Carboxypeptidase C serine protease (S10) family signature 124 136 IPR001563 GO:0004185|GO:0006508
Vvi14g1251 473 PRINTS Carboxypeptidase C serine protease (S10) family signature 437 450 IPR001563 GO:0004185|GO:0006508
Vvi14g1251 473 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 44 454 IPR001563 GO:0004185|GO:0006508
Vvi14g1251 473 FunFam Carboxypeptidase 38 296 - -
Vvi14g1251 473 ProSitePatterns Serine carboxypeptidases, histidine active site. 437 454 IPR033124 GO:0004185
Vvi14g1251 473 Gene3D - 326 363 - -
Vvi14g1251 473 Gene3D - 373 467 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Vvi14g1251 Vvi-Chr14 23972370 23975456 Dispersed/Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi14g1251 331 470 Calmodulin-binding Proteins AT2G22960 29.787 4.37e-13 65.9
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g1251 K16297 - vvi:100266848 972.23