Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g1246 ATGGGACCAAAATATTGTAGTGCTTCAAAAGCAGTTCTATTGAGCCTGATTTTATTTTGGCTAATACAGGCAGCAAAAGTGGGATTTTTCAGAGTATTTTCCTTGGCAAAGCCTGAAGCTGGGAAGCTAATTGTTGCCACCATCGCGCTTTTGGTAGCATCTACATCAATTGTTATGCTGCCAAAATATGGTGGAATGGTAATAGACATTGTATCAAGAGATATAAGGACTCCTGAACAACAATCTGAAGCCTTGACTGCTGTCAAGAATGCTGCACTAGCTGTTGTGCTGATGGTTGTATTAGGTTCTCTGTGTGTAGCAGTTCGGGAATGGTTGTTTGCTTCTGTTAGCGAAAGGATTGTAGCTCATTTGAGAAAGGACTTATTCAGTCACCTCATTAATCAGGACATTGCCTTCTTTGATGTTACTCCAACGGGCGAACTCCTAAGTAGACTATCTGAAGACTCCCAGATCATAAAGAATGTGGCAACTTCCAATCTCTCTTCAGCTCTTACAAGCATAACAATTGTATTTATTGGTCTTGGCTTCATGTTCTCATCATCATGGAAGTTAACATTGTTGGTATTGGCATTAGTGCCAGTTGTTTCAGTCGCTGCTCATGTATTTGGCCGCTATCTTCGTGAACTTTCACATAAAACTCAAGCTGCAGCTGCAGTAGCTTGCTCAATGGCTGAGGAATCTTTTGGGGCCATTCAGACAGTGAGATCTTTTGCACAAGAAGGTTATGCAATTTCAAGTTACTCAGAAAAAGTTCATGAGACCCTCAAGCTTGCACTGAGACAATCTAAATTAGTTGCTCTATTTTATGGAGGAATAAATGCGGTATTCACATTGTCTATTGTCATAGTGGTGGTTTATGGAGCTAGCTTAACAATAGCACGCTCAATGACTGCAGGCTCACTTGCATCCTTTATTCTGTATAGCCTCACAGTTGGAATCTCGATGCTCTCACTATTTGGACTATATACAACTGCAATGAAAGCTGCAGGCGCAAGTAGGAGAGTTTTTCAGCTGCTAGATCGTGTCTCACCAATGCCGATATCAGGGCATAAGTGCCCCTTAGGGAATCCAGATGGAGATGTGGAATTAGATGATATTTGGTTTGCATATCCTTCTCGGCCCAGTCATATGATACTCAAGGGAATATCTTTGAAACTGAGGCCCGGTTCAAAAGTTGCCCTTGTTGGTCCAAGTGGTGGTGGAAAAACGACAATTGCTAGCCTAATTGAGAGGTTTTACGACCCTCTCAAGGGAAAGATTTTGCTAAATGGGGTTCCTCTAGTGGAAATATCACACAAGTATCTACACAAAAAGATAAGTATAGTGAGCCAGGAGCCTGTCCTTTTCAATTGTTCTGTGGAAGAGAACATTGCCTATGGGTTTGACGGCAAAGCAAGCAGTTCAGAAATAGAAAATGCAGCTAAAATGGCTAATGCCCATGATTTCATAGCAAATTTTCCTGAAAAATATCGAACTGTTGTTGGAGAACGTGGGTTGAGACTCTCAGGAGGCCAGAAACAAAGGATTGCAATTGCGAGGGCACTCCTGATGGACCCAAGAGTTTTGCTATTAGACGAAGCCACAAGTGCTCTGGATGCCGAGAGCGAATACCTTGTTCAGGATGCAATGGAGTCTCTGATGAGGGGCAGAACAGTTCTGGTAATAGCACACAGGCTTTCCACTGTAAAAACTGCAGACATTGTTGCTGTAATATGTGATGGTCGAATAGCACAAAGTGGCAGCCATGAGGAGCTTCTCAGCAAGAATGGTATTTACACTGGCCTCGTCAAAAGGCAACTCCAAGGACCTTCAACTCCCCACTACAAAGACACCCACTTTCCACCTCCAATTGCAGAGAAAAAGCCAAATGATGACCAGGCTGCCAATGATCCCCTGACAGACCTTGAGCGTGGAGATGCAGATCAGGCAGCAAAAGTGGGATTTTTCAGAGTATTTTTCTTGGCAAAGCCTTATGCTGGGAAGCTAATTATTGCCACCATCGCACTTCTGATAGAATCTACATCACGTGTTATGATTCCAAAATATTGTGGAATAATAATAGACATTGTATCAAGAGATATAAGGACTCCTGAACAACAATCTGAAGCCTTGGTTGCTGTCAAGAATGCTGTACTAGATATTGTGATGATAGTTGTATTAGGTTCTCTGTGTTCAGCACTTGAGGAATGGTTGTTTGCTTCTGTTAGTGAAAGGATTGTAGCTCGTTTGAGAAAGGACTTATTCAGTCATCTCATTAATCAGGAAATTGCCTTCTTTGATGTTACTAAAACGGGGGAACTCCTAAGCAGACTATCTGAAGACTCCCAGATCATAAAGAATGTGGCAACTTCCAATCTCTCTTCAGCTCTTACAAGCATAACAACTGCTGCTATCACCCTTAGCTTCATGTTCTCATCATCATGGAAGTTAACATTGTTGGCTTTGGCTGTAGTGCCAGTCATTTCAGTTGCTGCACGTAAATTTGGTTACCATCTTCGCGAACTTTCAAATACAACTCAAGCTGCAGCTGCAGAAGCTTCCTCAATGGCACAGGAATCTTTTGGGGCCATTCGGACAGTGAGATCTTTTGCTCAAGAAGGTTATGCAATTTCAAGTTACTCAGAAAAAGTTGATCATACCCTCAAGCTTGGACTTAGACAAGCTAAATTAGTTGCTCTATTTTATGGAGGTCTAGATGCAGCATCCACATTGTCTCTTATTACAGTGATGGTTTATGGAGCTATCTTAACAATAGCACGCTCAATTACTACTGGCTCACTTACATCCTTTATTCTGTATTGCTTCACAGTTCGATCCTCAGTATCCTCACTAGCAGGACTATATACAGCTGGAATGAAAGCTGCAGGTGCAAGTAGGAGAGTTTTTCAGCTGCTAGATCGTGTCTCAACCATGCCGATATCAGGGAATGAGTGCCCCTTAGGGAATCCAGATGGAGATGTGGAATTAGATGATATCTGGTTTGCATATCCTTCTCGGCCCAGTCACATGATACTCAAGGGAATAACTTTGAAACTGAGGCCTGGTTCAAAAGTTGCCCTTGTTGGTCCAAGTGGTGGTGGAAAAACAACAATTGCTGGCCTAATTGAGAGGTTTTACGACCCTCTCAAGGGAAAGATTTTGCTAAATGGGGTTCCTCTAGTGGAAATATCACACAAGTATCTACACAAGAAGATAAGTATAGTGAGCCAGGAGCCTGTACTTTTCAATTGCTCTGTGGAAGAGAACATTGCCTACGGGTTCGATGGCAAAGCAAGCAGTTCAGAAATAGAACATGCAGCTAAAATGGCTAATGCCCATGATTTCATAGAAAATTTTCCTGAAAAATATCGAACTGTTGTTGGAGAGCGTGGGTTGAGACTCTCAGGAGGCCAGAAACAAAGGATTGCAATTGCGAGGGCACTCCTGATGGACCCAAGAGTTTTGCTATTAGACGAAGCCACCAGCGCTCTGGATGCCGAGAGTGAATACCTTGTTCAGGATGCAATGGAGTCTCTGATGAGGGGCAGGACAGTTCTGGTAATAGCACACAGGCTTTCAACCGTAAAAAGTGCAGACACAGTTGCTGTAATATCTGATGGTCGAATAGCAGAAAGTGGCAACCATGAGGAGCTTCTCAGCAAGAATGGTATTTACACTGGCCTCGTCAAAAGGCAACTCCAAGGACCTTCAACCCCCAACTAG 3723 0.429 MGPKYCSASKAVLLSLILFWLIQAAKVGFFRVFSLAKPEAGKLIVATIALLVASTSIVMLPKYGGMVIDIVSRDIRTPEQQSEALTAVKNAALAVVLMVVLGSLCVAVREWLFASVSERIVAHLRKDLFSHLINQDIAFFDVTPTGELLSRLSEDSQIIKNVATSNLSSALTSITIVFIGLGFMFSSSWKLTLLVLALVPVVSVAAHVFGRYLRELSHKTQAAAAVACSMAEESFGAIQTVRSFAQEGYAISSYSEKVHETLKLALRQSKLVALFYGGINAVFTLSIVIVVVYGASLTIARSMTAGSLASFILYSLTVGISMLSLFGLYTTAMKAAGASRRVFQLLDRVSPMPISGHKCPLGNPDGDVELDDIWFAYPSRPSHMILKGISLKLRPGSKVALVGPSGGGKTTIASLIERFYDPLKGKILLNGVPLVEISHKYLHKKISIVSQEPVLFNCSVEENIAYGFDGKASSSEIENAAKMANAHDFIANFPEKYRTVVGERGLRLSGGQKQRIAIARALLMDPRVLLLDEATSALDAESEYLVQDAMESLMRGRTVLVIAHRLSTVKTADIVAVICDGRIAQSGSHEELLSKNGIYTGLVKRQLQGPSTPHYKDTHFPPPIAEKKPNDDQAANDPLTDLERGDADQAAKVGFFRVFFLAKPYAGKLIIATIALLIESTSRVMIPKYCGIIIDIVSRDIRTPEQQSEALVAVKNAVLDIVMIVVLGSLCSALEEWLFASVSERIVARLRKDLFSHLINQEIAFFDVTKTGELLSRLSEDSQIIKNVATSNLSSALTSITTAAITLSFMFSSSWKLTLLALAVVPVISVAARKFGYHLRELSNTTQAAAAEASSMAQESFGAIRTVRSFAQEGYAISSYSEKVDHTLKLGLRQAKLVALFYGGLDAASTLSLITVMVYGAILTIARSITTGSLTSFILYCFTVRSSVSSLAGLYTAGMKAAGASRRVFQLLDRVSTMPISGNECPLGNPDGDVELDDIWFAYPSRPSHMILKGITLKLRPGSKVALVGPSGGGKTTIAGLIERFYDPLKGKILLNGVPLVEISHKYLHKKISIVSQEPVLFNCSVEENIAYGFDGKASSSEIEHAAKMANAHDFIENFPEKYRTVVGERGLRLSGGQKQRIAIARALLMDPRVLLLDEATSALDAESEYLVQDAMESLMRGRTVLVIAHRLSTVKSADTVAVISDGRIAESGNHEELLSKNGIYTGLVKRQLQGPSTPN* 1241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g1246 1240 MobiDBLite consensus disorder prediction 620 641 - -
Vvi14g1246 1240 Gene3D - 366 633 IPR027417 -
Vvi14g1246 1240 Gene3D - 992 1233 IPR027417 -
Vvi14g1246 1240 Pfam ABC transporter 1012 1162 IPR003439 GO:0005524
Vvi14g1246 1240 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 670 960 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vvi14g1246 1240 FunFam ABC transporter B family member 25 721 991 - -
Vvi14g1246 1240 FunFam ABC transporter B family member 25 366 608 - -
Vvi14g1246 1240 MobiDBLite consensus disorder prediction 610 641 - -
Vvi14g1246 1240 Gene3D ABC transporter type 1, transmembrane domain 182 831 IPR036640 GO:0005524|GO:0016020
Vvi14g1246 1240 CDD ABC_MTABC3_MDL1_MDL2 994 1232 - -
Vvi14g1246 1240 SMART AAA_5 1021 1215 IPR003593 GO:0016887
Vvi14g1246 1240 SMART AAA_5 395 582 IPR003593 GO:0016887
Vvi14g1246 1240 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 360 606 IPR027417 -
Vvi14g1246 1240 ProSitePatterns ABC transporters family signature. 508 522 IPR017871 GO:0005524|GO:0016887
Vvi14g1246 1240 FunFam ABC transporter B family member 25 95 365 - -
Vvi14g1246 1240 Pfam ABC transporter transmembrane region 669 945 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vvi14g1246 1240 Pfam ABC transporter transmembrane region 43 317 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vvi14g1246 1240 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 368 605 IPR003439 GO:0005524
Vvi14g1246 1240 ProSitePatterns ABC transporters family signature. 1134 1148 IPR017871 GO:0005524|GO:0016887
Vvi14g1246 1240 FunFam ABC transporter B family member 25 992 1234 - -
Vvi14g1246 1240 Gene3D ABC transporter type 1, transmembrane domain 837 991 IPR036640 GO:0005524|GO:0016020
Vvi14g1246 1240 SUPERFAMILY ABC transporter transmembrane region 657 973 IPR036640 GO:0005524|GO:0016020
Vvi14g1246 1240 SUPERFAMILY ABC transporter transmembrane region 31 348 IPR036640 GO:0005524|GO:0016020
Vvi14g1246 1240 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 985 1232 IPR027417 -
Vvi14g1246 1240 Pfam ABC transporter 386 536 IPR003439 GO:0005524
Vvi14g1246 1240 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 44 334 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vvi14g1246 1240 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 994 1231 IPR003439 GO:0005524
Vvi14g1246 1240 CDD ABC_MTABC3_MDL1_MDL2 368 606 - -
Vvi14g1246 1240 PANTHER ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL 638 1234 IPR039421 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi14g1246 Vvi-Chr14 23920911 23938859 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi14g1246 95 1232 Calmodulin-binding Proteins AT2G36910 33.585 0.0 593
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g1246 - - vvi:100259965 1152.89