Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g1239 ATGCTTTCCCAGCTCCGCCACCTTCATCTGGTATCTCTAATCGGCTACTGCAACGACGATCGCGAGATGATCCTCGTGTACGATTACATGGCCCACGGTACTCTCCGCGATCATCTCTACAAAACAGATAATCCTCCATTGTCGTGGAAGCAGAGGCTCGAGATTTGCATTGGCGCAGCTCGAGGATTGCACTATCTTCATACAGGTGTGAAGCACACGATCATTCACCGGGATGTGAAGACAACCAACATCCTTTTGGATGAGAAATGGGTGGCCAAAGTTTCGGATTTCGGATTGTCAAAGATGGGCCCTACCAGCATGTCGAACGCCCACGTCAGCACAGTGGTGAAGGGTAGTTTCGGGTATTTGGACCCAGAGTATTACCGGCGGCAACAGCTAACGGAGAAATCCGACGTGTACTCATTCGGTGTGGTGCTGTTTGAAGTACTGTGCGCGAGGCCACCCTTGAATCAGACGGTGGAGAAAGAGCGGGTGAGTCTAGCACAGTGGGCCCCGTCCTGCTATAGAGATGGGAAGCTCGAACAGATCGTTGATCCTTTTTTAAAGGGTAAGATAGCGCCGGACTGTCTGCAGAAGTTTGGGGAGATCGCAGTGAGTTGTTTGCAGGATCAGGGGATCGAACGGCCATCCATGACCGATGTGGTGTGGGGCCTTCAATTTGCAATGCAGCTACAGGAGAGCGCGGAGCAGGAGACGGAGAAGAGTGGGTCGTGGAGAAAAGTGAAGGACGAAGAAGCCCCACTGAAGACCTCCATTACTGATGATAGTGACGACGCGTACGTGTTAACTAGTGATAGTGGAGGCACGTGGGATTCCCAGAGTAGTGGGATAATGATACCATCTAGCGGAGAAGAAAAAAGTTCAACCAGTCGTGAATCTGATGCGCTGATGTCAGGTGCCGTGTTCTCTGAGATCCTGAACCCAAAGGGGCGATGA 957 0.5172 MLSQLRHLHLVSLIGYCNDDREMILVYDYMAHGTLRDHLYKTDNPPLSWKQRLEICIGAARGLHYLHTGVKHTIIHRDVKTTNILLDEKWVAKVSDFGLSKMGPTSMSNAHVSTVVKGSFGYLDPEYYRRQQLTEKSDVYSFGVVLFEVLCARPPLNQTVEKERVSLAQWAPSCYRDGKLEQIVDPFLKGKIAPDCLQKFGEIAVSCLQDQGIERPSMTDVVWGLQFAMQLQESAEQETEKSGSWRKVKDEEAPLKTSITDDSDDAYVLTSDSGGTWDSQSSGIMIPSSGEEKSSTSRESDALMSGAVFSEILNPKGR* 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g1239 318 PANTHER OS07G0166700 PROTEIN 1 232 IPR045272 GO:0004714|GO:0006468
Vvi14g1239 318 MobiDBLite consensus disorder prediction 263 303 - -
Vvi14g1239 318 SUPERFAMILY Protein kinase-like (PK-like) 2 227 IPR011009 -
Vvi14g1239 318 SMART serkin_6 1 228 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi14g1239 318 Gene3D Phosphorylase Kinase; domain 1 1 30 - -
Vvi14g1239 318 Gene3D Transferase(Phosphotransferase) domain 1 31 253 - -
Vvi14g1239 318 Pfam Protein tyrosine and serine/threonine kinase 1 222 IPR001245 GO:0004672|GO:0006468
Vvi14g1239 318 FunFam Receptor-like protein kinase FERONIA 30 247 - -
Vvi14g1239 318 MobiDBLite consensus disorder prediction 236 318 - -
Vvi14g1239 318 ProSitePatterns Serine/Threonine protein kinases active-site signature. 74 86 IPR008271 GO:0004672|GO:0006468
Vvi14g1239 318 MobiDBLite consensus disorder prediction 239 259 - -
Vvi14g1239 318 ProSiteProfiles Protein kinase domain profile. 1 228 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi14g1239 Vvi-Chr14 23824739 23825695 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi14g1239 1 318 Receptor kinase-like Gene Family AT3G51550 67.913 1.33e-149 441
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Vvi14g1239 PK_Tyr_Ser-Thr 5.7e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g1239 - - vvi:100241219 646.736