Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g1236 ATGAGTCCTACCAGCGTGGCAAATGCCCACATCAGCACAGTTGTCAAGGGTAGTTTTGGCTATCTGGATCCAGAGTATTTCAGATTCCAACGTCTGAACGAGAAGTCTGACGTCTACTCATTTGGGGTGGTATTATTTGAAGTACTGTGTGCAAGGCCACCTGTAAATCAAACAGGGGAGGAAGAGCAAGCGGGCTTGGCACACTGGGCCGTCACCAGCTACAAAAATGGAAAGCTGGAGGAAATCATCGACCCCCATTTGGAGGGTAAGATTGCACCAATGTGCTTGGAGAAATACGGAGAGATTGCAGTGAGTTGCGTGCTTGATCAAAGGATCAAGCGTCCGTCAATGAGCGATGTGGTGAGGGGCCTTGAGCTTGCATTGGAGCTCCAGGAAAGTACAGAAAAGGGGAACAGTATAAATGAGTCCCTGGACCATGAGGAGAGCCTATCAGAAATTTCTGGTACAGATGACGACGACAAAGATGTGTTTCATAATGGAGGTAGAGACGTCTGCGATTCAGAGGCTAGCAGGGTGACAATCCCGAGCAATGATGAAAAAAGTTCAATTAGTGTTATGATGGAAGACGATGCATGCGTTGTCTGA 606 0.4769 MSPTSVANAHISTVVKGSFGYLDPEYFRFQRLNEKSDVYSFGVVLFEVLCARPPVNQTGEEEQAGLAHWAVTSYKNGKLEEIIDPHLEGKIAPMCLEKYGEIAVSCVLDQRIKRPSMSDVVRGLELALELQESTEKGNSINESLDHEESLSEISGTDDDDKDVFHNGGRDVCDSEASRVTIPSNDEKSSISVMMEDDACVV* 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g1236 201 SUPERFAMILY Protein kinase-like (PK-like) 10 122 IPR011009 -
Vvi14g1236 201 MobiDBLite consensus disorder prediction 139 172 - -
Vvi14g1236 201 PANTHER OS07G0166700 PROTEIN 8 131 IPR045272 GO:0004714|GO:0006468
Vvi14g1236 201 Gene3D Transferase(Phosphotransferase) domain 1 1 151 - -
Vvi14g1236 201 ProSiteProfiles Protein kinase domain profile. 1 128 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi14g1236 201 MobiDBLite consensus disorder prediction 135 188 - -
Vvi14g1236 201 Pfam Protein tyrosine and serine/threonine kinase 18 123 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi14g1236 Vvi-Chr14 23804813 23805418 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi14g1236 8 179 Receptor kinase-like Gene Family AT3G51550 53.977 9.58e-56 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Vvi14g1236 PK_Tyr_Ser-Thr 9.4e-09 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g1236 - - vvi:100853183 404.445