Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g1227 ATGAGTTTGGATCAAATCAATCCCATGCTCACCTTGGCTGTCTATCTTTCTTCCTTCTTTCTTCAATTCCTCATCTCCATGGCCGGGGATGAGTCTCCGCCTTATAGGCCCACTGATAATATTCTCCTCGACTGCGGCTCATCCATCAACACAAAGTCTCCTGACGGCAGGACTTGGCAAGGTGATCAAGGGTCAAAATTCTCTGGAACTTCTGATGTTCAAAACTCATCCTCATCATCCAAAGCTTTCCGGCAAGACCCATCGGTCGACCAAGTTCCATACATGACCGCTCGTATCTTTAACTCCTCGTTCACATACAGCTTCCCTGTTTCAGCCGGACCCAAGTTTGTCCGCTTCTACTTCTACCCAACTGCGTACTCTGGCCATAATGAATCCGAGTTCTTCTTCTCCGTCACATCAGGGGTGTACACCCTCCTAAGCAACTTCAGCGCTTCTCTTACAGTTGCTCCTATGGGGTCCGGAGTATCTTCCCTTGTTAAAGAATTTTCCATCAACGTGTGGGACAACCAAATACTCAATATAACCTTCTCTCCATCCCCAAACTCCTGGGCCTTCGTTAATGGTATTGAAGTCGTTTCCATGCCAAATCATCTCTACGGACAAATTGACCTTAAATTGGTTTCCGCGGTTCAGCAATTTGAAATGGATAACTACACAGCCCTTGAAACTGTTTATCGTTTAAATGTTGGTGGCAATCATATCCCGGCGGAAGCAGACAGTGGAATGTTTCGGTCCTGGAGTCAGGATGACTCTTACATATACGGAGGAAATTTGGGGTTGACACCTAACCTGGATATCCGCATACAATACACTCAGACGACACCGCCTTACATTGCACCACGTACAGTCTACACCACTTCACGCACCATGACTAAACAAGAGGAGATAAATAAGAGAACCAACTTGACGTGGCTCTTCCATGTGGATTCTGGGTTTTATTATCTTGTTAGGCTTCATTTCTGCGAGTTGCAATTGGAGGTAACCCGTCCAGGTGAACGAGTTTTTTCTATATTTCTTAACAATCAGACAGCTGAAGAAGAAATGGACGTCATCGTTAGGAGTGGTGGCACAGGATATCCAATTTATCAAGATTATGTTGTTTATTTGTTATCCGATGGCAGCCGAAGGAAGCAGGAGCTGTGGCTCGATTTACATCCTAATGCGGATAGCAAGTATGCTAACGTAATATTAAATGGATTAGAGATGTTCAAGTTAAATAATTCCAACGGTAGTCTCGCAGGACTCAATCCTGATCCGGTACTAAATCCTCCTCCCTCGGAACAGCACCCAAACTCCCCGGTAAAGCCCAACAATAGGGCGCCACTGGTGCTGATAACAGTCATTGTAGCTGCGGTCGGCGGAGTAGTCGCACTCTCTCTTCTCTGGTTCTTGGTTCTCCGACCGCGGATGAGAGTGAAACACGTTGGTGGCATCAGTCGGGCAAAGTCATCTTGGGTCCCATTTTCCTACACGACAAGGTCCACAAGCACCAACGGCTCGTCACTACCGGCCGATATCTGCCGCCACTTCTCCCTTGCCCAGATTAAAGACGCCACATGCAACTTCAACAAGAACTTCATCATCGGCGAGGGAGGGTTCGGAAACGTTTACAAAGGCTTCATCAAAGGCGGCTCCACCACGGTTGCGGTTAAACGGCTGAATCCATCATCAAAACAAGGTGCCCGCGAATTCGAAACAGAGATCAGAATGCTGTCCAAGCTCCGCCACATCCATCTCGTGTCTATGATCGGTTACTGTGATGAAGAAGGAGAGATGATCCTTGTCTACGATTACATGGCTCGTGGCACTCTTCGTGATCATCTTTATAAAACAAAAAACCCTCCACTCCCATGGAAGCAACGCCTTCAAGTCTGCATTGGGGCGGCGCGTGGATTACACTACCTTCACACAGGCGCGAAGCATACAATCATTCACCGGGACGTCAAATCCACCAATATCCTGTTAGACGAGAAATGGGTGGCCAAGGTTTCGGATTTCGGGTTGTCTAGAGTAGGCCCCACGAGTATGACCCAGACCCACGTCAGCACAGCAGTGAAGGGCAGTTTCGGTTACGTGGATCCAGAGTATTTCCGGTTGCGGCAGTTGACGGAGAAGTCTGACGTGTACTCGTTCGGAGTGGTGCTGTTTGAAGTGTTATGCGCTAGGCCGGCGGTGATTCCCGACGCTCCAGAAAAGCAGGTGTGTTTAGCAGAGTGGGGCCGGAGATCTTATCGGAAAGGAGCCCTAGTTCGGATCATGGACCAAAATCTGAGGGACGAGGTTGCGCCAGAGTGTTTGAAAAAGTTTGGGGAGATCGCTGATAGCTGCGTGCGTGACAAGGGAATCGAACGGCCACCAATGAGCGATGTGGTGTGGGCCCTTGAGTTTGCACTGCAGCTCCAGGAGACGGCGGAAAGGAACTCCCAAATCAACAGTGGGGATGAGGTGTACATTGGTCGGGTTGGAATCAAACCGGACGGCTCACAACCGAGCCCAATTACTGTGACACGTGGAGGTACCAGCACCAGTGATCACGATGACCTGATCTCAGTGTCAAGCTCAAGCACTACCGTCACGTCTAGGGTGAGCACTAGTCAAATGAGCGTCCCCAGTTACGACCACGTCAGATGGGTGTGCTCTGAGATAGATAATACAAAGGGACGATGA 2688 0.4903 MSLDQINPMLTLAVYLSSFFLQFLISMAGDESPPYRPTDNILLDCGSSINTKSPDGRTWQGDQGSKFSGTSDVQNSSSSSKAFRQDPSVDQVPYMTARIFNSSFTYSFPVSAGPKFVRFYFYPTAYSGHNESEFFFSVTSGVYTLLSNFSASLTVAPMGSGVSSLVKEFSINVWDNQILNITFSPSPNSWAFVNGIEVVSMPNHLYGQIDLKLVSAVQQFEMDNYTALETVYRLNVGGNHIPAEADSGMFRSWSQDDSYIYGGNLGLTPNLDIRIQYTQTTPPYIAPRTVYTTSRTMTKQEEINKRTNLTWLFHVDSGFYYLVRLHFCELQLEVTRPGERVFSIFLNNQTAEEEMDVIVRSGGTGYPIYQDYVVYLLSDGSRRKQELWLDLHPNADSKYANVILNGLEMFKLNNSNGSLAGLNPDPVLNPPPSEQHPNSPVKPNNRAPLVLITVIVAAVGGVVALSLLWFLVLRPRMRVKHVGGISRAKSSWVPFSYTTRSTSTNGSSLPADICRHFSLAQIKDATCNFNKNFIIGEGGFGNVYKGFIKGGSTTVAVKRLNPSSKQGAREFETEIRMLSKLRHIHLVSMIGYCDEEGEMILVYDYMARGTLRDHLYKTKNPPLPWKQRLQVCIGAARGLHYLHTGAKHTIIHRDVKSTNILLDEKWVAKVSDFGLSRVGPTSMTQTHVSTAVKGSFGYVDPEYFRLRQLTEKSDVYSFGVVLFEVLCARPAVIPDAPEKQVCLAEWGRRSYRKGALVRIMDQNLRDEVAPECLKKFGEIADSCVRDKGIERPPMSDVVWALEFALQLQETAERNSQINSGDEVYIGRVGIKPDGSQPSPITVTRGGTSTSDHDDLISVSSSSTTVTSRVSTSQMSVPSYDHVRWVCSEIDNTKGR* 896
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g1227 895 Pfam Protein tyrosine and serine/threonine kinase 534 799 IPR001245 GO:0004672|GO:0006468
Vvi14g1227 895 CDD STKc_IRAK 535 802 - -
Vvi14g1227 895 ProSitePatterns Protein kinases ATP-binding region signature. 535 558 IPR017441 GO:0005524
Vvi14g1227 895 SUPERFAMILY Protein kinase-like (PK-like) 499 803 IPR011009 -
Vvi14g1227 895 Gene3D Phosphorylase Kinase; domain 1 513 605 - -
Vvi14g1227 895 SMART serkin_6 529 804 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi14g1227 895 FunFam receptor-like protein kinase FERONIA 494 605 - -
Vvi14g1227 895 Gene3D Transferase(Phosphotransferase) domain 1 606 825 - -
Vvi14g1227 895 MobiDBLite consensus disorder prediction 421 441 - -
Vvi14g1227 895 MobiDBLite consensus disorder prediction 52 85 - -
Vvi14g1227 895 ProSitePatterns Serine/Threonine protein kinases active-site signature. 650 662 IPR008271 GO:0004672|GO:0006468
Vvi14g1227 895 MobiDBLite consensus disorder prediction 834 872 - -
Vvi14g1227 895 Gene3D - 40 202 - -
Vvi14g1227 895 Gene3D - 226 412 - -
Vvi14g1227 895 FunFam FERONIA receptor-like kinase 226 413 - -
Vvi14g1227 895 FunFam Receptor-like protein kinase FERONIA 606 823 - -
Vvi14g1227 895 FunFam FERONIA receptor-like kinase 40 202 - -
Vvi14g1227 895 ProSiteProfiles Protein kinase domain profile. 529 804 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi14g1227 895 PANTHER OS03G0124300 PROTEIN-RELATED 15 487 IPR046957 GO:0004672
Vvi14g1227 895 MobiDBLite consensus disorder prediction 836 872 - -
Vvi14g1227 895 Pfam Malectin-like domain 43 411 IPR024788 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi14g1227 Vvi-Chr14 23691818 23694505 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi14g1227 35 821 Receptor kinase-like Gene Family AT3G51550 54.444 0.0 834
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Vvi14g1227 Malectin_like 9.2e-44 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g1227 - - vvi:100244676 1769.59