LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi14g1224	ATGTTCTTACAGCACGTGATTGCTCCCATGCAGAAGAACTCATGCAGATACCTGGTCATTCTCACCTTTGTTTACTCCTCCTTCTTCCATGGCCATCTAGCAATTGCAGCAACCTCTGATTTGTCGCCATCTCGGTACTACCCCACCGACATCATCCTCCTGAATTGTGGCAGCTTCGGCAACTCGACAGCGCTGGATGACCGAGGATGGATGGGAGATGTTGGCTCAAAATTCACGTCATCACGGCTTTTAAACCAGACATCAGTATCTGCCAAAGCCCCTCATAGCCATGGCTTCTCCATCGATCCCGTTCCCTACATGACTGTTCGGTTCTTTCGCTCTCAATTTACCTACACGTTTCATGTCAAGCCAGGCCAGAAATTCATACGCTTGCACTTTTACCCAGCTTCGTTCCCAGGTTTCGAGAGGTCTGAGGCCTTCTTCTCTGTAAAAGCCGGTCCTTATACTCTCCTTAGCAACTTCAGTCCTTCTCACACTGCTGATGCTTTGGGGGTAAAAGTTTTGGTTAAAGAGTTCTCTGTAAACATAAATGACAATCAGAGATCCATCAACATTACTTTTCTTCCCTCTTCAAATGCCCGGAAAGATGCTTTTGCGTTTATCAATGGCATTGAGATTGTGTCTATGCCAGCCAATCTTTATTACCCTCGCTCCAGGGATATTGACGTCTCTTCCTCAGGCCATCAGCATGATTTCCTTATCAAGAAGAACACTGCTCTTGAGGCAGTTCACCGATTAAACGTTGGCGGGAGCTATATTTCACCAAATAATGATTCTGGCATGTTCAGAAGCTGGTTGGAAGACACCAATTACTTGTTAGAATCAGGTGGTGTCCTGGTTAACACTACTCAGAGGATCAGATCCACAAGGATACCCAATTATATCGCACCTGCCCAAGTCTACCGGACGGCGCGGTCGGTGGGCATGGATAAAGAAGTGAACATGAGGTACAACCTAACATGGAAACTCCCTGTGGATCCTGGATTTAAGTACCTTGTCAGGCTCCATTTCTGCGCGTTTCAGGGTCAGACAAAGAAGAGCGGCAATAGGAAGTTCCACATCTATATAAACAATGAGACAGCGGAGGCTAATGCTGATGTAATCACTTGGAGCGGCGGCAATGGAATTCCGATCTATAGAGATTATGTTGTGTTTATTCAGAAGGGTAATCCTCACCTCGTTATAGCTTTGCTTCCTAATTCTGATTCAAAGACTCGGTATTCCGAAGCAATACTAAACGGGTTGGAGATCTTCAAAATAAAGAAATCTGATGGGAGCCTTCCCAGACCCAGTCCTGTACCCGTCCCCTTTCCAGCACCACAGCCAGCAATTTTTTGGCATTCAAGTCGATTCATTGCCATTGGTTGGAGTGCACTAGGTGGTGTAGCTCTACTCTCTATAATAGTTGTCATTGTACTCTGTTGGCGGAGGCTGGGAAAGAGCAAAAAGAGAGAAGTGCTTTCGGTGCCGAAAGAACAGTGTCGCCAATTTTCACTCGCCGAGATTCGAGCTGCCACCAATAATTTTAATAAAGCTCTGGTAATTGGAGAGGGTGGCTTTGGTAGAGTATTCAAAGGTTACATCAATGGGGGAGAAACTCCTGTTGCTATTAAAGGGTTGGAACCGACATCAGAGCAAGGAGCCCATGAGTTCTGGACGGAGATAGATATGCTATCAAGGCTCCGTCATCTCCATCTAGTCTCTCTTATAGGCTATTGCAACCATCCCCAAGCGATGATCCTCGTATACGACTATATGGCCCAAGGAAGCCTCCGTGATCATCTTTATAAAACAGATAAGGCTCCATTGACATGGAAGCAGAGGCTCGAGATCTGCATTGGTGCTGCTCGGGGACTGAAGCACCTACATCAAGGCTCGGAGCACAAAATCATTCACCGTGACATCAAGACCACAAATATTTTGTTAGATGAGAAGTGGGTGGCCAAGGTTTCTGATTTTGGGTTGTGTAAGGTGGGGGCGGCTAATATGTCAAAAAGCCACATAACTACGGATGTCAAGGGTACCTTCGGATATTTAGATCCAGAATACTTTTGGAGCCAGAAACTGACAGAAAAATCTGATGTTTATGCATTTGGGGTGGTGTTGTTTGAAGTGCTGTGCGCGAGACCGGCTGTGGATATGGAGCTTGAAGAGGAGCAGCAAAGTCTTGTACAGTGGGCCAAGCACTGTGTAAAGAAGGGAACCCTCGAACAGATCATTGACCCTTATTTGATGGGAAAGATTGCGCCAGAAAGTTTGAAGGTGTTCGCCAGTATAGCTTATAGATGCGTGCTGGATCAAAGACTTAAACGCCCCAAAATGGCCCATGTATTGAACAACCTTGTGCGAGCTCTGGAGTTGCAGCAGAGCGCGGATGATGGGGAATTTGATAGCAAGCCTGGTGGAGCTTACAGTGAAAAACTTGATGAGACGGTATGCTTGTGTCCAAGAGAAATTGAGCTCTTGTCAATACCATCAAGAGCAGAAAGTCTGGCATACACATGCCCTGCCCTTTGGCAGAGAAGTATGTCTCCCAAAGTACTCATCAGATTTTTAAGCGACAAGGCTGGAATCAAACGACCTAGACCATCTCCTTCTGAATACCAGAGGGTGCCACACGATCATGAACAAGCGCAAAATGAAGGTACCACTATACTGCGAACATCGGCGAATGTTTTCTGA	2703	0.4624	MFLQHVIAPMQKNSCRYLVILTFVYSSFFHGHLAIAATSDLSPSRYYPTDIILLNCGSFGNSTALDDRGWMGDVGSKFTSSRLLNQTSVSAKAPHSHGFSIDPVPYMTVRFFRSQFTYTFHVKPGQKFIRLHFYPASFPGFERSEAFFSVKAGPYTLLSNFSPSHTADALGVKVLVKEFSVNINDNQRSINITFLPSSNARKDAFAFINGIEIVSMPANLYYPRSRDIDVSSSGHQHDFLIKKNTALEAVHRLNVGGSYISPNNDSGMFRSWLEDTNYLLESGGVLVNTTQRIRSTRIPNYIAPAQVYRTARSVGMDKEVNMRYNLTWKLPVDPGFKYLVRLHFCAFQGQTKKSGNRKFHIYINNETAEANADVITWSGGNGIPIYRDYVVFIQKGNPHLVIALLPNSDSKTRYSEAILNGLEIFKIKKSDGSLPRPSPVPVPFPAPQPAIFWHSSRFIAIGWSALGGVALLSIIVVIVLCWRRLGKSKKREVLSVPKEQCRQFSLAEIRAATNNFNKALVIGEGGFGRVFKGYINGGETPVAIKGLEPTSEQGAHEFWTEIDMLSRLRHLHLVSLIGYCNHPQAMILVYDYMAQGSLRDHLYKTDKAPLTWKQRLEICIGAARGLKHLHQGSEHKIIHRDIKTTNILLDEKWVAKVSDFGLCKVGAANMSKSHITTDVKGTFGYLDPEYFWSQKLTEKSDVYAFGVVLFEVLCARPAVDMELEEEQQSLVQWAKHCVKKGTLEQIIDPYLMGKIAPESLKVFASIAYRCVLDQRLKRPKMAHVLNNLVRALELQQSADDGEFDSKPGGAYSEKLDETVCLCPREIELLSIPSRAESLAYTCPALWQRSMSPKVLIRFLSDKAGIKRPRPSPSEYQRVPHDHEQAQNEGTTILRTSANVF*	901

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vvi14g1224	900	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	637	649	IPR008271	GO:0004672\|GO:0006468
	Vvi14g1224	900	SUPERFAMILY	Protein kinase-like (PK-like)	494	788	IPR011009	-
	Vvi14g1224	900	Pfam	Protein tyrosine and serine/threonine kinase	521	787	IPR001245	GO:0004672\|GO:0006468
	Vvi14g1224	900	MobiDBLite	consensus disorder prediction	865	885	-	-
	Vvi14g1224	900	Gene3D	Transferase(Phosphotransferase) domain 1	593	807	-	-
	Vvi14g1224	900	PANTHER	OS03G0124300 PROTEIN-RELATED	27	487	IPR046957	GO:0004672
	Vvi14g1224	900	MobiDBLite	consensus disorder prediction	865	884	-	-
	Vvi14g1224	900	ProSitePatterns	Protein kinases ATP-binding region signature.	522	545	IPR017441	GO:0005524
	Vvi14g1224	900	Gene3D	Phosphorylase Kinase; domain 1	479	592	-	-
	Vvi14g1224	900	CDD	STKc_IRAK	522	788	-	-
	Vvi14g1224	900	ProSiteProfiles	Protein kinase domain profile.	516	792	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vvi14g1224	900	FunFam	Receptor-like protein kinase FERONIA	593	807	-	-
	Vvi14g1224	900	FunFam	FERONIA receptor-like kinase	51	217	-	-
	Vvi14g1224	900	Pfam	Malectin-like domain	54	427	IPR024788	-
	Vvi14g1224	900	FunFam	receptor-like protein kinase FERONIA	483	592	-	-
	Vvi14g1224	900	SMART	serkin_6	516	789	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vvi14g1224	900	Gene3D	-	50	217	-	-
	Vvi14g1224	900	Gene3D	-	246	429	-	-
	Vvi14g1224	900	FunFam	FERONIA receptor-like kinase	245	428	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vvi14g1224	Vvi-Chr14	23647671	23650373	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vvi14g1224	35	800	Receptor kinase-like Gene Family	AT3G51550	48.952	0.0	743

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_CrRLK1L-1	Vvi14g1224		Malectin_like	1e-45	CL0202

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vvi14g1224	-		-	vvi:100246444	1789.62