Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g1209 ATGGGTTCAGCATCTCCAGCCATGAAGCCTGATGTAACGTTGACCCTATGCTTGTCATCCCCGGACCATTTTGAAGCCATCAACCCCGAAGAAAGAGGGATTCTTCTCATTCAGATGCTCCTAAAATGTGCCATGAACGCCTCTTCCGGCAACCTCCATCGCGCCGACGCCTGCCTCCACCAGATCTCCCACCATGCCTCCATTTCCGGCGACTCCATGCAGCGCCTCGCAGCCCGGTTCGCCTCCGCCCTCGCGGTCCGCCTTGTGAAGCGTTGGCCTGGCCTATACAAAGCCTTGAACCGCAATCCATCGTGGCAGCCCAAAGCTGATTGGGCCGGACCCATCTTTGGCAAGGTCTTCCCTCACCTCGAGCTTGCCTATACCATCATAGCCCAAACCCTAACCCGAACCATGGCGGAGGAGCGGGTTATCCATATATTGGACACTGGGTCGGGTGACCCTGAGTTGTGGGTCCCACTTCTTCATAGTTTTGCGCATATGCCACATGGTCCTCCCCACTTGAAAATCACTTGCATTAGTAGTAACAAACTTGCTTTAGAGAAGCTGGGCATTAGGCTTGTGAAAGAGGCTGAAGCCCTCGCCATGCCCTTCCAGTTTAACCCTCTAAACGTGACTCTAAGAGACCTAACCATTGACATGCTTAGGGTGAGATCAGGGGAGGCATTAGCCATTACATCGGTGCTTAATCTTCACACCTTATTAGCCGAGGATGATCGTGTGGACGCGCATTTTGGACTCAATAAGGGCAACATTGTGAAGGAATGTAAGCAAATGAGTCGATTTCTAGCAACGGTCAGGTCAATGTCTCCTAAGATACTATTATTAGTCGAACAAGAATCTGATCATAATCTAAATCGTTTAACAGATCGATTCGTTCAAGGCTTATATTACTATAGCGCAATTTTTGACTCTATGAATGCAACTTTAGGGAGTTCATCAAGTGAGGAGCGACTTGCGGTAGAGGAGATGTACGGAAGAGAGATTGAAAATATAGTGGCATGCGAAGGGTTGGAGAGGGTGGAGAGGCATGAGAGTTATGGAAGGTGGATGGTTAGGTTGGGGCGAGGTGGGTTCAAGCCAGTGCGACTGTGGTATGAGAGTATGGAGGGTGTAAAGGATTTGGTGGGAGGAGATGGGGAGGATGGGTATAAGGTTAGAAATGAGAGGGCTAGTTTGATGATATGTTGGAGTCAAAGGCCTCTTTATGCCATATCTGCATGGATTTGCCAGTAA 1254 0.4952 MGSASPAMKPDVTLTLCLSSPDHFEAINPEERGILLIQMLLKCAMNASSGNLHRADACLHQISHHASISGDSMQRLAARFASALAVRLVKRWPGLYKALNRNPSWQPKADWAGPIFGKVFPHLELAYTIIAQTLTRTMAEERVIHILDTGSGDPELWVPLLHSFAHMPHGPPHLKITCISSNKLALEKLGIRLVKEAEALAMPFQFNPLNVTLRDLTIDMLRVRSGEALAITSVLNLHTLLAEDDRVDAHFGLNKGNIVKECKQMSRFLATVRSMSPKILLLVEQESDHNLNRLTDRFVQGLYYYSAIFDSMNATLGSSSSEERLAVEEMYGREIENIVACEGLERVERHESYGRWMVRLGRGGFKPVRLWYESMEGVKDLVGGDGEDGYKVRNERASLMICWSQRPLYAISAWICQ* 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g1209 417 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 37 410 IPR005202 -
Vvi14g1209 417 ProSiteProfiles GRAS family profile. 27 415 IPR005202 -
Vvi14g1209 417 Pfam GRAS domain family 36 414 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi14g1209 Vvi-Chr14 23412635 23413888 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi14g1209 16 417 GRAS Transcription Factor Family AT1G50420 38.667 1.01e-105 319
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vvi14g1209 GRAS 1.2e-100 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g1209 - - vvi:100263490 842.032