Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g1207 ATGGTAGGATTGATGGGTTGGGGATCAGTTCCAGTTCAAGGTTGGAGGAAAGGGCCCTGGACTCCTGAAGAGGACAAGCTTCTTTCTGAATATGTCAGCTCCCATGGCGAGGGAAGATGGAGCTCTGTTGCTAGATGTTCAGGGTTGAATAGGAGTGGCAAGAGCTGTAGGTTAAGGTGGGTGAATTACCTGAGGCCTGGTCTTAAGAGAGGCCATATAACCACAATGGAAGAGGGCATCATCATAGAACTGCATGCTCTTTGGGGTAACAAATGGTCCACCATTGCCAGATACTTACCAGGGAGAACGGACAACGAAATAAAAAACTACTGGAGAACCCACTTCAAGAAAAACCAAAAACAACAAAAGCCAAAAGCTCAACAACCTCTAGAACCAAAACTGCAGCAGCAGCAGCAGCAGCAGCAGGAAGATCATGAGATCAAATTGGAGAATGGAAAAATGGGTGAAGCACAAGGGAAGCAAGAGGCGATTTCCATGGAGGACCAATGCTTGCCTGTGATGTATCAAGAGATTGACGATCATCAAGCAAGGCAACAGGTGGCCTCCATGTACCCCACTATACTGGAAGATCTGTGCTTGCCTGTGACGTATCAAGATCATCTGCAGGGAGAGGATCAAGGCCTATGGGGTGGCTTGTGGAACCTGGACGACACTATAGATCACACTATTTCTGGCGGAGGGAACTCATCACAAAACTATTACAATGGAGGCTACATTTTCTAA 744 0.4704 MVGLMGWGSVPVQGWRKGPWTPEEDKLLSEYVSSHGEGRWSSVARCSGLNRSGKSCRLRWVNYLRPGLKRGHITTMEEGIIIELHALWGNKWSTIARYLPGRTDNEIKNYWRTHFKKNQKQQKPKAQQPLEPKLQQQQQQQQEDHEIKLENGKMGEAQGKQEAISMEDQCLPVMYQEIDDHQARQQVASMYPTILEDLCLPVTYQDHLQGEDQGLWGGLWNLDDTIDHTISGGGNSSQNYYNGGYIF* 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g1207 247 CDD SANT 74 115 IPR001005 -
Vvi14g1207 247 Pfam Myb-like DNA-binding domain 71 114 IPR001005 -
Vvi14g1207 247 Pfam Myb-like DNA-binding domain 17 64 IPR001005 -
Vvi14g1207 247 ProSiteProfiles Myb-like domain profile. 16 64 IPR001005 -
Vvi14g1207 247 SMART sant 69 117 IPR001005 -
Vvi14g1207 247 SMART sant 16 66 IPR001005 -
Vvi14g1207 247 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 69 119 IPR017930 -
Vvi14g1207 247 MobiDBLite consensus disorder prediction 116 144 - -
Vvi14g1207 247 CDD SANT 19 64 IPR001005 -
Vvi14g1207 247 Gene3D - 17 69 - -
Vvi14g1207 247 Gene3D - 73 150 - -
Vvi14g1207 247 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 16 68 IPR017930 -
Vvi14g1207 247 MobiDBLite consensus disorder prediction 122 142 - -
Vvi14g1207 247 ProSiteProfiles Myb-like domain profile. 65 115 IPR001005 -
Vvi14g1207 247 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 16 196 - -
Vvi14g1207 247 SUPERFAMILY Homeodomain-like 14 111 IPR009057 -
Vvi14g1207 247 FunFam Myb transcription factor 17 69 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi14g1207 Vvi-Chr14 23384136 23385107 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi14g1207 14 233 MYB Transcription Factor Family AT3G30210 55.507 1.91e-76 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vvi14g1207 Myb_DNA-binding 1.6e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g1207 K09422 - vvi:100248088 465.692