Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g1205 ATGGGGAGAGGAAGGGTTCAGTTGAAGCGGATCGAGAACAAGATCAGTCGGCAAGTAACTTTCTCCAAGAGAAGATCTGGCCTGCTGAAGAAAGCTCATGAGATTTCTGTGCTGTGCGATGCTGAGGTAGCTTTGATCGTCTTCTCTACTAAAGGGAAGCTCTTCGAGTACTCCAGTGATTCCAGCATGGAAAGGATCCTTGAACGATATGAAAGATATTCACTTTCGGAGAGACAGCTTCTCTCAACAGATCCTGACCCACAGGGAAACTGGTCGATGGATTACCCTAAACTCACTGCTAGGATTGAAGTTTTACAAAGGAACCTGAGGCACTTTGTGGGAGAAGATCTGGATCCCTTAAGTCTGAGAGAGCTACAAAATTTGGAGCAACAGCTTGATACAGCTCTTAAGCGCATCAGAACAAGAAAGAACCAGCTTATGCATGAATCGATTTCGGAGCTTCAGAAGAAGGAGAAATCACTGGTGGAGCAAAACAACGCATTAGCAAAGAAGGTGAAGGAGAAGGAGAAGGTCGAACAGAATAATCGTGCACAATGGGAGCAGCAAAACAACATAGGCCAAAACTCATCTGCCTATGTGGTGCCACCACCCCCACTACAGCTCCCTTCACTCACCATTGGTGGTAGTTTTGTGGGGAGAGCTGTAGAGGAAGACGGAGCTGAAGCTCGACCTAGTCCCAATACCCTCATGCCACCATGGATGCTGCGCCACGTCAATGAATAA 744 0.4718 MGRGRVQLKRIENKISRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSSDSSMERILERYERYSLSERQLLSTDPDPQGNWSMDYPKLTARIEVLQRNLRHFVGEDLDPLSLRELQNLEQQLDTALKRIRTRKNQLMHESISELQKKEKSLVEQNNALAKKVKEKEKVEQNNRAQWEQQNNIGQNSSAYVVPPPPLQLPSLTIGGSFVGRAVEEDGAEARPSPNTLMPPWMLRHVNE* 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g1205 247 Coils Coil 122 145 - -
Vvi14g1205 247 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vvi14g1205 247 Pfam K-box region 88 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vvi14g1205 247 CDD MADS_MEF2_like 2 74 IPR033896 GO:0000977|GO:0045944
Vvi14g1205 247 MobiDBLite consensus disorder prediction 224 247 - -
Vvi14g1205 247 Gene3D - 13 85 IPR036879 GO:0003677|GO:0046983
Vvi14g1205 247 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Vvi14g1205 247 FunFam MADS-box transcription factor MADS-MC 13 86 - -
Vvi14g1205 247 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vvi14g1205 247 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vvi14g1205 247 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vvi14g1205 247 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vvi14g1205 247 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Vvi14g1205 247 SUPERFAMILY SRF-like 2 88 IPR036879 GO:0003677|GO:0046983
Vvi14g1205 247 Coils Coil 151 189 - -
Vvi14g1205 247 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vvi14g1205 247 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi14g1205 Vvi-Chr14 23320536 23341023 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi14g1205 1 213 MADS-box Gene Family AT1G26310 62.791 1.53e-91 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Vvi14g1205 K-box 7.8e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g1205 K09264 - vvi:100232953 467.233