Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g1202 ATGGGTTCTGTTTGTTGCTGTTTGCGGGTTGAGGATTTTGACGATTATGTAAATCCCAACAGTTCCATATATAGGAACTGTATGTGCCTCAGTTGCTTTGTTCAGAACTTCTTGAATGTGTATACATCATTATTTCGAAGAGGGGAAGTGAATTCCATCCCATCATCCATTCAGGGGGCGGCTTCTTTGAGTTCCACTACATCCCTTGATGACTCTTTATCTGACATGTATCGTTCTCCTCCAAGGCCCTTGCCTTATGATGTGGACCCGAGGAATTTCCGCTTGCAGCGGGATGGGCTTGTTTCAAGACGCGAGAAGGGTTCAAGTCATTCACATGAGGAGTCAGAACCTCTAAGAAGTGATACTGATGGGGATTCAGAATCTTTGATTACCAGAGACAAGTGGAATGAGTCAGATGATGGATCAAAAGAACAGCGCCCCAGGTCCTCAGTGAAGCATTCGATGGCAAAAACAACAATGGGACTTGGGTTTATTTATTCATCGTCAGAAGATGAGGATGTCTGTCCAACATGTCTTGAAGAATATACTCCAGAAAATCCCAAGATAATGACAAAATGCTCTCACCATTTTCACCTTGGTTGTATATATGAATGGATGGAGAGAAGTGAAACATGTCCAGTCTGTGGCAAGGTTATGATGTTCGATGAAACGACTTGA 678 0.4307 MGSVCCCLRVEDFDDYVNPNSSIYRNCMCLSCFVQNFLNVYTSLFRRGEVNSIPSSIQGAASLSSTTSLDDSLSDMYRSPPRPLPYDVDPRNFRLQRDGLVSRREKGSSHSHEESEPLRSDTDGDSESLITRDKWNESDDGSKEQRPRSSVKHSMAKTTMGLGFIYSSSEDEDVCPTCLEEYTPENPKIMTKCSHHFHLGCIYEWMERSETCPVCGKVMMFDETT* 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g1202 225 CDD RING-H2_AIRP1-like 171 219 - -
Vvi14g1202 225 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 57 223 - -
Vvi14g1202 225 ProSiteProfiles Zinc finger RING-type profile. 175 215 IPR001841 -
Vvi14g1202 225 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 154 220 IPR013083 -
Vvi14g1202 225 SMART ring_2 175 215 IPR001841 -
Vvi14g1202 225 MobiDBLite consensus disorder prediction 68 154 - -
Vvi14g1202 225 FunFam E3 ubiquitin-protein ligase At3g02290-like 152 222 - -
Vvi14g1202 225 Pfam RING-H2 zinc finger domain 172 215 IPR024766 GO:0008270
Vvi14g1202 225 MobiDBLite consensus disorder prediction 91 151 - -
Vvi14g1202 225 SUPERFAMILY RING/U-box 170 222 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi14g1202 Vvi-Chr14 23287292 23292722 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi14g1202 1 223 C3H Transcription Factor Family AT5G38895 59.735 2.17e-93 275
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g1202 - - vvi:100244614 448.743