Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g1197 ATGAAAAACCCTCCTAACCAAACTGCTAAATTTGGCTTCTTTAGAATAAAACCCTCGGAGAAGCCTCCCGTCCTCACGCAGCCTCCTGCAGCAGCACATAGGGTTCCATCTCAACTCTCTCTGCAACTAATGGGTCCCAAAAAAGGTGGGAAGGCTGCAGTGCCAGCAAAGAAAAAGACTGAAAAGGTTGTGAACCCCTTGTTTGAGAAGCGTCCAAAGCAGTTTGGGATAGGTGGTGCATTACCACCAAAGAAGGACCTGACTAGATTTGTCAAATGGCCCCATGTGGTCCGTATCCAGAGGAAAAGGAGGATTTTGAGGCAACGGTTGAAGGTTCCTCCTGCTTTGAACCAGTTTACTAAAACCCTTGACAAGAACCTTGCTACAAATCTTTTTAAGATGTTGCTCAAATATAGACCTGAGGACAAGGCTGCCAAGAAGGAAAGACTTCTAAAAAGAGCACAAGCTGAAGCAGAGGGGAAAACTGCAGAGTCAAAGAAACCCATTGTTGTCAAATATGGGCTTAATCACATTACCTACCTCATTGAGCAGAACAAGGCTCAGTTGGTGGTAATTGCACATGATGTTGATCCAATTGAGCTTGTTGTTTGGCTACCAGCTTTGTGCCGGAAAATGGAGGTCCCTTACGCAATTGTGAAGGGCAAGTCTCGTCTTGGAGCGATTGTTCACAAGAAAACAGCCACGGCTTTGTGTCTTACATCAGTGAAGAATGAGGATAAGTTGGAATTCAGCAAGATTGTTGAGGCTGTTAAGGCCAACTTCAACGACAAGTATGATGAATACCGCAAGAGATGGGGAGGTGGCATCATGGGATCCAAATCTCAGGCTAAGACAAAAGCCAAGGAGAAACTCATAGCCAAGGAGGCTGCACAAAGAATGTCTTAA 906 0.4525 MKNPPNQTAKFGFFRIKPSEKPPVLTQPPAAAHRVPSQLSLQLMGPKKGGKAAVPAKKKTEKVVNPLFEKRPKQFGIGGALPPKKDLTRFVKWPHVVRIQRKRRILRQRLKVPPALNQFTKTLDKNLATNLFKMLLKYRPEDKAAKKERLLKRAQAEAEGKTAESKKPIVVKYGLNHITYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEVPYAIVKGKSRLGAIVHKKTATALCLTSVKNEDKLEFSKIVEAVKANFNDKYDEYRKRWGGGIMGSKSQAKTKAKEKLIAKEAAQRMS* 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g1197 301 Gene3D - 93 276 IPR029064 -
Vvi14g1197 301 ProSitePatterns Ribosomal protein L7Ae signature. 209 226 IPR004037 GO:0042254|GO:1990904
Vvi14g1197 301 SUPERFAMILY L30e-like 128 262 IPR029064 -
Vvi14g1197 301 PANTHER RIBOSOMAL PROTEIN L7AE FAMILY MEMBER 85 284 - -
Vvi14g1197 301 FunFam 60S ribosomal protein L7a 93 276 - -
Vvi14g1197 301 PRINTS Ribosomal protein L7A family signature 72 89 IPR001921 -
Vvi14g1197 301 PRINTS Ribosomal protein L7A family signature 167 187 IPR001921 -
Vvi14g1197 301 PRINTS Ribosomal protein L7A family signature 89 106 IPR001921 -
Vvi14g1197 301 PRINTS Ribosomal protein L7A family signature 228 252 IPR001921 -
Vvi14g1197 301 PRINTS Ribosomal protein L7A family signature 260 280 IPR001921 -
Vvi14g1197 301 PRINTS Ribosomal protein L7A family signature 133 146 IPR001921 -
Vvi14g1197 301 PRINTS Ribosomal protein L7A family signature 109 128 IPR001921 -
Vvi14g1197 301 Pfam Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 158 247 IPR004038 -
Vvi14g1197 301 Coils Coil 144 164 - -
Vvi14g1197 301 PRINTS Ribosomal protein L7A/RS6 family signature 190 203 IPR018492 -
Vvi14g1197 301 PRINTS Ribosomal protein L7A/RS6 family signature 171 185 IPR018492 -
Vvi14g1197 301 PRINTS Ribosomal protein L7A/RS6 family signature 216 230 IPR018492 -
Vvi14g1197 301 PRINTS Ribosomal protein L7A/RS6 family signature 206 216 IPR018492 -
Vvi14g1197 301 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi14g1197 Vvi-Chr14 23215987 23219760 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi14g1197 44 301 Cytoplasmic Ribosomal Protein Gene Family AT3G62870 85.659 3.60e-165 457
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g1197 K02936 - vvi:100266932 473.011