Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g1195 ATGAGGAAGCTCAAGTTCCATGAGAAGAAGCTTCTGAAGAAGGTGAATTTCCTAGAATGGAAGAGAGAAGGTGGTCACAGGGAAGCCCATGTTATGCACCGCTACCATGTCACGGGCCGAGACGATTACAAAAAATATTCGGGTTTGTGCCGGATGGTGCAAAAGCTTGTGAACATTTTGAAGCAGATGGACCCGAGAGATCCTTTCCGAATTGAGATGACTGACATGCTTTTGGAAAAACTGTACAACATTGGTGTGATACCAACCAGAAAAAGCTTGGCACTGTGTGATCGCTTAGCGGTGTCATCCTTTTGTAGGCGCAGGCTTTCAACTGTGTTGGTGCGATTGAAGTTTGCAGAGCACTTGAAAGAAGCTGTAACGTACATTGAGCAAGGACACATCCGGGTGGGTCCAGACACAGTGACTGACCCAGCATTTCTTGTGACGAGGAATTTGGAGGACTTTGTGACATGGGTAGATTCATCCAAGATTAAAAGAAAGGTGCTCCAGTACAATGAGAGGTTGGATGATTATGATGCCATGAACTGA 549 0.4572 MRKLKFHEKKLLKKVNFLEWKREGGHREAHVMHRYHVTGRDDYKKYSGLCRMVQKLVNILKQMDPRDPFRIEMTDMLLEKLYNIGVIPTRKSLALCDRLAVSSFCRRRLSTVLVRLKFAEHLKEAVTYIEQGHIRVGPDTVTDPAFLVTRNLEDFVTWVDSSKIKRKVLQYNERLDDYDAMN* 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g1195 182 CDD S4 107 168 - -
Vvi14g1195 182 PANTHER 30S 40S RIBOSOMAL PROTEIN 5 178 IPR022801 GO:0003735|GO:0015935|GO:0019843
Vvi14g1195 182 SUPERFAMILY Alpha-L RNA-binding motif 26 174 - -
Vvi14g1195 182 Pfam Ribosomal protein S4/S9 N-terminal domain 3 90 IPR001912 GO:0019843
Vvi14g1195 182 Gene3D - 107 181 IPR036986 GO:0003723
Vvi14g1195 182 FunFam U3 small nucleolar ribonucleoprotein IMP3 107 179 - -
Vvi14g1195 182 SMART s4_6 107 174 IPR002942 GO:0003723
Vvi14g1195 182 ProSiteProfiles S4 RNA-binding domain profile. 107 173 - -
Vvi14g1195 182 SMART Ribosomal_S4_2 3 106 IPR001912 GO:0019843
Vvi14g1195 182 Pfam S4 domain 107 152 IPR002942 GO:0003723
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi14g1195 63 148 Cytoplasmic Ribosomal Protein Gene Family AT5G39850 33.333 5.47e-08 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g1195 K14560 - vvi:100261745 365.54