Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g1193 ATGGTGAAGCCTACAAGGAGTCATCAGGAAGAGGAGGAAGACGACGATGAAGACATCATTGCTAGGAACGACCCCTCTTCGCTAAAAGGGGATTTGGCGATGAGGGCAGACGGGAGAAGTGTCGATCAAAAGGTGAGCGCGCACCGGTCTAAGCATTCGGCGACGGAGCAGCGCCGGAGGAGCAAGATTAATGAGAGATTTCAGATTTTAAGAGATCTCATTCCTCAAAATGACCAGAAAAGAGATAAGGCTTCATTTTTATTAGAGGTCATAGAATACATTCAGTTTTTACAAGAAAAGTTAAATATGTACGAGGGATCATACCAAGGATGGAGTCAGGAACCCACAAAGTTGATGCCATGGAGAAATCGTGGGCCTGTAGAAAATTTTATGGATCATTCTCAAGTCATAAAGAATGGCTCTGGTCATGAGAATAATGTTGCTGTCACCCCTGCAACCCTTGTGAATGCACAAAACCCAGTGGAATCCGACTTTGGCACTGCTGCTGCATATAATGTAATGGATAATACCCCTGGGCCAGCAAGTCAAGCAGTTCCCCTGAACATGCCACTGCAAACTAATATGTTCACTCATGTTGGGAGGAGTGACATACCTACACAGTCATTGCATGGATCTGTTTCTGATGTTGAGAACATTGCTTCCCAGCCCTTACCTCACTTCTCCCACGGTAGACCGTGTACAACTGACTGTGCTGTCCCAAGCAATACAGTGAATGAACCAGAGGAGCTGACAATTGAAAGTGGAACAGTTAGCATCTCAAGTGCCTACTCTCAAGGGTTGTTGAATTCACTAACCCAGGCGCTGCAATCTTCCGGCGTGGATTTGTCACAGGCTAGCATCTCAGTACAGATTGATATTGGGAAACGAGCAAATAAAGGACTGAATGCAACAACATCAAATGCAAAGGATTATGAAAACCCATCTCCTAGTAATCGAACAATGGCACATTCGGGGTTTAGGAGCAGCAGTGAGGATTCTGATCAAGCTCACAAGAGGCTCAGAACAGACACAAGCTAG 1038 0.4547 MVKPTRSHQEEEEDDDEDIIARNDPSSLKGDLAMRADGRSVDQKVSAHRSKHSATEQRRRSKINERFQILRDLIPQNDQKRDKASFLLEVIEYIQFLQEKLNMYEGSYQGWSQEPTKLMPWRNRGPVENFMDHSQVIKNGSGHENNVAVTPATLVNAQNPVESDFGTAAAYNVMDNTPGPASQAVPLNMPLQTNMFTHVGRSDIPTQSLHGSVSDVENIASQPLPHFSHGRPCTTDCAVPSNTVNEPEELTIESGTVSISSAYSQGLLNSLTQALQSSGVDLSQASISVQIDIGKRANKGLNATTSNAKDYENPSPSNRTMAHSGFRSSSEDSDQAHKRLRTDTS* 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g1193 345 PANTHER BES1-INTERACTING MYC-LIKE PROTEIN 5 342 IPR044295 GO:0003700|GO:0006351|GO:0046983
Vvi14g1193 345 FunFam BHLH domain class transcription factor 45 117 - -
Vvi14g1193 345 MobiDBLite consensus disorder prediction 1 61 - -
Vvi14g1193 345 MobiDBLite consensus disorder prediction 304 345 - -
Vvi14g1193 345 CDD bHLH_AtBIM_like 46 122 - -
Vvi14g1193 345 MobiDBLite consensus disorder prediction 330 345 - -
Vvi14g1193 345 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 47 97 IPR011598 GO:0046983
Vvi14g1193 345 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 47 120 IPR036638 GO:0046983
Vvi14g1193 345 MobiDBLite consensus disorder prediction 35 61 - -
Vvi14g1193 345 SMART finulus 53 103 IPR011598 GO:0046983
Vvi14g1193 345 MobiDBLite consensus disorder prediction 304 329 - -
Vvi14g1193 345 Pfam Helix-loop-helix DNA-binding domain 49 98 IPR011598 GO:0046983
Vvi14g1193 345 Gene3D - 45 118 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi14g1193 Vvi-Chr14 23126204 23135858 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi14g1193 6 301 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G69010 45.425 6.57e-75 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vvi14g1193 HLH 2.1e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g1193 - - vvi:100246438 681.019