Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g1189 ATGCCGAGACTAATCACTCTCCTTCAGCAGAACCAGCAGCCAGTGCCCCAGACGCGGCAGCAGACGCTTCCGAGGGGGGGACGAGCCTACCCCTACCCTCATGGCCTCAATATGCCTGATTCTCCAATGCCAGGTGTAGCTGGAGGCATGCTTTCAATTCCTTATGACATGGGTGGCAGGCCACTTCGTGATGCTGCAGCTGGACAGCCAATACTCATTCCATCTTCGGCTTCAACTCATGCAAGTGTAGCATCTGATCAGCAAAGAGCAATGCTGGGTGAAAGTTTGTACCCTCTTTTGGATCAGTTAGAGAATGAGATGGCAGTTAAATTGATAGGCACGTTTCTGGAGGTGAATCAGACTGAGGTTTTGTATCTGTTTGAGTCGCTAGAGGTTTGA 399 0.5063 MPRLITLLQQNQQPVPQTRQQTLPRGGRAYPYPHGLNMPDSPMPGVAGGMLSIPYDMGGRPLRDAAAGQPILIPSSASTHASVASDQQRAMLGESLYPLLDQLENEMAVKLIGTFLEVNQTEVLYLFESLEV* 133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g1189 132 Pfam Poly-adenylate binding protein, unique domain 82 129 IPR002004 GO:0003723
Vvi14g1189 132 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 72 132 IPR002004 GO:0003723
Vvi14g1189 132 SUPERFAMILY PABC (PABP) domain 16 130 IPR036053 GO:0003723
Vvi14g1189 132 SMART poly_2 84 132 IPR002004 GO:0003723
Vvi14g1189 132 Gene3D - 70 132 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi14g1189 Vvi-Chr14 23094965 23095363 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi14g1189 7 132 Eukaryotic Initiation Factors Gene Family AT2G23350 48.031 9.50e-27 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g1189 K13126 - vvi:100255846 165.236