Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g1187 ATGAACTGCTCACCCCTTTTTTTGAGTCTTTTCTTCTCTATGCGCAGCCACGCCGCGGAGACGGTTGTGATGTTTTGGACGCATGAACCGACGGAGAAGTCCTGGGTTTTGGGCTGGTGGTACAAAAAACATTCTCATCTTCGACGTTGTGCAAATGAGCGTTGCTCAACAGCTCTTCCTATACGCACTAATGGCCTAGATGCAAGCATTGACTCTAGTGCGTCTGTCTCCAACTCTATAGCTATCCCAGGGTCAGAGTTCCCTGCCAAAGATTCTCATCTCTTTTGGTGGAGTCATCGTCATGATAAAGATCAGCTTGCTTCAGCATCTGGCATACCAAGATACTCCTACAAGGATATTCAAAAAGCAACACACAATTTCACAACTATTTTGGGACAGGGGTCATTTGGACCAGTGTATAAAGCTACAATGGCTACAGGTGGAGTTGTAGCCGTAAAGGTGCTTGCTTCTAATTCAAAACAGGGGGAGAAAGAGTTTCAAACTGAGGTATCTTTGCTAGGTAGACTGCACCACCGGAATCTTGTGAATTTGGTAGGATATTGTGTAGATAAAGGCCAACACATGTTAATTTATGAATTCATGAGTAATGGAAGCTTGGAAAACCTTCTATACAGTGAAGAGGGACAGGGTTTGAGTTGGGAGGAAAGGCTGCAAATTGCGCTTGATATTTCACATGGAATCGAATATCTTCACGAAGGGGCAGTTCCACCCGTTATACATCGGGATTTGAAGTCTGCTAATATATTGTTGGACCAATCCATGAGAGCTAAGGTTGCTGATTTTGGACTGTCAAAGGAAGAAGTCTTTGATGGCCGTAACTCAGGCCTGAAAGGTACATATGGCTACATAGACCCTGCCTATATATCCTCTAACAAGTTCACCATGAAAAGTGACATCTACAGTTTTGGTGTTATCATCTTTGAGCTCATTACTGCAATCCACCCACACCAAAACCTAATGGAGTTTGTCAATCTTGCGGCTATGAGCCCAGATGGGGCTGATGAAATACTTGATAAGCAACTTGTGGGAGAATGTAAACTCGAAGAAGTAAGAACACTGGCCAGCATCGGACACAAATGCTTGCACAAAACACCAAGGAAGCGCCCATCAATTGGAGAGGTTTCACTGGCTATAGCAAGGATAAAACAAAGGCGTTTTGCTAAAGAACATACCATGTCTTTGGCAGACAGTGATCTTTCACGAATGGTAAGCCGGATAGAGAATCAACAAGTTGAGTTGTTTGAGATAGCCAGCTTCAAGGACAAAGCCACTGAATAG 1299 0.438 MNCSPLFLSLFFSMRSHAAETVVMFWTHEPTEKSWVLGWWYKKHSHLRRCANERCSTALPIRTNGLDASIDSSASVSNSIAIPGSEFPAKDSHLFWWSHRHDKDQLASASGIPRYSYKDIQKATHNFTTILGQGSFGPVYKATMATGGVVAVKVLASNSKQGEKEFQTEVSLLGRLHHRNLVNLVGYCVDKGQHMLIYEFMSNGSLENLLYSEEGQGLSWEERLQIALDISHGIEYLHEGAVPPVIHRDLKSANILLDQSMRAKVADFGLSKEEVFDGRNSGLKGTYGYIDPAYISSNKFTMKSDIYSFGVIIFELITAIHPHQNLMEFVNLAAMSPDGADEILDKQLVGECKLEEVRTLASIGHKCLHKTPRKRPSIGEVSLAIARIKQRRFAKEHTMSLADSDLSRMVSRIENQQVELFEIASFKDKATE* 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g1187 432 CDD STKc_IRAK 131 381 - -
Vvi14g1187 432 SUPERFAMILY Protein kinase-like (PK-like) 94 381 IPR011009 -
Vvi14g1187 432 ProSitePatterns Serine/Threonine protein kinases active-site signature. 245 257 IPR008271 GO:0004672|GO:0006468
Vvi14g1187 432 Gene3D Transferase(Phosphotransferase) domain 1 201 412 - -
Vvi14g1187 432 FunFam Calcium/calmodulin-regulated receptor-like kinase 1 98 200 - -
Vvi14g1187 432 ProSiteProfiles Protein kinase domain profile. 125 393 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi14g1187 432 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 95 390 - -
Vvi14g1187 432 Gene3D Phosphorylase Kinase; domain 1 94 200 - -
Vvi14g1187 432 FunFam Calcium/calmodulin-regulated receptor-like kinase 2 201 409 - -
Vvi14g1187 432 SMART serkin_6 125 394 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi14g1187 432 Pfam Protein tyrosine and serine/threonine kinase 127 381 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi14g1187 Vvi-Chr14 23074020 23082316 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi14g1187 111 381 Receptor kinase-like Gene Family AT3G19300 42.294 2.91e-72 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-2 Vvi14g1187 PK_Tyr_Ser-Thr 1e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g1187 - - vri:117930902 852.047