Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g1170 ATGGCGGGCGTTTCGGACGCTCAATTCCCTCAGGAACCCTCCGTCGTATACGAAGATGTAGAAACCCTACGCTCCATCCCCATCTTTTCCAACTACGACCACTTCTACTCTTACGATTCCGACGGAGATTGCTTCTACGGCCAGGATCAGGTCGACATGGTTACCAATTTGTTTGAAAATCGATCTGAGGACTTCCGAAATGCGGATGATGATGGAGATTCGGGTTTGGATCCGTTTTCGGATGATTTGGATCTTAGGATTCTGGGAGTGGGAAGTGAGGTTGAGCAAAATCATGGGGACGAGTTTGGGTTAGGGTTAGGGACTGGGTTTGAATCTGATAAGATGGCTTGGGCATCCGAATCGGGTGAATCTTCGAGTGTGCATGGCGAGAATGCGTCTGCGGTGGCGTATGGGCTTCGTGTTGTTGGAATTGGATCCGATTCGGATTCGGATTCGGAGGATGATGGGGTTGAATTTAGTTCTGAAGTAAATGATGATTATGGGTTGGATCGGGTTGAGGATTTGGATCCTCGGCTTTATTGGGATTGTCTGCCATTGGAGGATACTAGGACCAATAATGAAGATTTTGAATGGGAACAGGTGGATGAGAGAGCAAGCTTGAGCTTGGCGGTTAATGGGGTTGACGAATTATCGCTTTCCTCTGAAATTTCATCAGAGGAAGAAGAAGAAGAAGAAGCTGGTGATGGCAGGGACGAAGCGGCTCGGAGTCTTGATTGGGAAGTTCTATTGGCGATGAACAATTTGGAGAGGACATTGAATTTAGAACATGACTTGGATATCGATTCATTCTTTACCGATCAAGATGATTATGTTAATGCCACAGAATATGTAACCCTTTTTGGGCTATTCACAGAAGATGATGCTGGTTTAAAGGGTAGTCCTCCTGCCGCCAAGTCGGTTGTGCAGAATCTTCCGGTGGTTGAATTAACGCAACAATATTTGGAGAAGAACAATGTGGTTTGTGCAGTTTGTAAGGATGAGATTTTATTGGAGGAAAAGGTGAAAAGACTTCCTTGCTCTCATCATTACCATGGAGATTGCATAGTACCGTGGCTGAGCATTCGCAATACTTGCCCAGTTTGTCGGTATGAGTTGCCCACAGATGATCCTGAGTATGAGCACATGAAGAGCCAAAGAACTGGCCGTGGCCTGTAG 1176 0.4617 MAGVSDAQFPQEPSVVYEDVETLRSIPIFSNYDHFYSYDSDGDCFYGQDQVDMVTNLFENRSEDFRNADDDGDSGLDPFSDDLDLRILGVGSEVEQNHGDEFGLGLGTGFESDKMAWASESGESSSVHGENASAVAYGLRVVGIGSDSDSDSEDDGVEFSSEVNDDYGLDRVEDLDPRLYWDCLPLEDTRTNNEDFEWEQVDERASLSLAVNGVDELSLSSEISSEEEEEEEAGDGRDEAARSLDWEVLLAMNNLERTLNLEHDLDIDSFFTDQDDYVNATEYVTLFGLFTEDDAGLKGSPPAAKSVVQNLPVVELTQQYLEKNNVVCAVCKDEILLEEKVKRLPCSHHYHGDCIVPWLSIRNTCPVCRYELPTDDPEYEHMKSQRTGRGL* 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g1170 391 SMART ring_2 328 368 IPR001841 -
Vvi14g1170 391 MobiDBLite consensus disorder prediction 218 239 - -
Vvi14g1170 391 FunFam E3 ubiquitin-protein ligase RING1-like 289 375 - -
Vvi14g1170 391 ProSiteProfiles Zinc finger RING-type profile. 328 369 IPR001841 -
Vvi14g1170 391 SUPERFAMILY RING/U-box 315 375 - -
Vvi14g1170 391 Pfam Ring finger domain 328 369 IPR001841 -
Vvi14g1170 391 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 290 375 IPR013083 -
Vvi14g1170 391 MobiDBLite consensus disorder prediction 221 235 - -
Vvi14g1170 391 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 218 373 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi14g1170 Vvi-Chr14 22855198 22856373 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi14g1170 138 391 C3H Transcription Factor Family AT3G02340 44.727 3.95e-50 172
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g1170 - - vvi:104881617 745.347