Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g1158 ATGTTGAAGGACGAAGGTTGTAACGCTGATGCCGCCGCCGGTGGAGGCGGTGGTTGGGCTCGTGTTTGCGACACGTGTAGGTCGGCGGCATGCACTATTTACTGCAGAGCGGACTCCGCCTACCTGTGCGCTGGCTGCGACGCCCGCATACACGCCGCCAACAGGGTGGCGTCGCAGCACGAGCGGGTCTGGGTGTGCGAGTCGTGCGAGCGCGCTCCGGCGGCGTTCGTCTGCAAGGCGGACGCGGCGTCGCTCTGCGCCACCTGCGACGCTGACATCCACTCCGCTAATCCTCTGGCCCGCCGACACCACCGCGTGCCGGTTCTCCCCATCGCCGGCTGCCTCTACGGGCCTCCCGCCACCGACCCCGGAGGCACCGTGGTGAGGTCTGCCGCGGAGGCCGACAACGGCTTCCTGGGCCAAGAGGCTGAGGAGACCATAGATGAGGAAGACGAAGACGAGGCAGCTTCGTGGCTGTTGCTGAACCCAGTGAAGAATAACAACGGAAGCAGCAACAACCAGAACAATGGATTGTTGTTCGGTGGGGAGGTGGATGAGTATCTGGACCTAGTGGAGTACAATTCATGCCCTGAGAATCAGTTCAGTGATCAGTATAATCAGCAGCAGCCGCCGCCGCATTACAGCGTTCCGCACAAGAATTATGGGGGAGACCGTGTCGTGCCAGTTCAGTGCGGGGAAGCAAAGGGGCAGCTACACCAGCAGCATCAGCAGCAGGGTTTTCATCTGGGGATGGAGTATGAGTCCTCGAAAGCTGCCTACAGCTACAACCCTTCAATTAGCCACAGCGTTAGCTTCTTCATCACTGTCAATTGTTTAATTTCTTTAATTCTTCATGATCACTATGCCTACGCCTTCCAAACACACACTGGACTTTCAGAATCATCTGTTTCCTCATTCATACTTGTTTATGGGGGGTGTCTTCAGTTCATTCAAATCCATCCCAAATTCATCCGTTCCCATGTACTGTTTATAAGACGTACACTCTTTTGTGGTTATCTTGGTGAATCCCAGTAA 1035 0.5604 MLKDEGCNADAAAGGGGGWARVCDTCRSAACTIYCRADSAYLCAGCDARIHAANRVASQHERVWVCESCERAPAAFVCKADAASLCATCDADIHSANPLARRHHRVPVLPIAGCLYGPPATDPGGTVVRSAAEADNGFLGQEAEETIDEEDEDEAASWLLLNPVKNNNGSSNNQNNGLLFGGEVDEYLDLVEYNSCPENQFSDQYNQQQPPPHYSVPHKNYGGDRVVPVQCGEAKGQLHQQHQQQGFHLGMEYESSKAAYSYNPSISHSVSFFITVNCLISLILHDHYAYAFQTHTGLSESSVSSFILVYGGCLQFIQIHPKFIRSHVLFIRRTLFCGYLGESQ* 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g1158 344 ProSiteProfiles Zinc finger B-box type profile. 18 65 IPR000315 GO:0008270
Vvi14g1158 344 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 23 267 IPR045281 GO:0009909
Vvi14g1158 344 CDD Bbox1_BBX-like 65 108 - -
Vvi14g1158 344 SMART bboxneu5 66 108 IPR000315 GO:0008270
Vvi14g1158 344 SMART bboxneu5 18 65 IPR000315 GO:0008270
Vvi14g1158 344 Pfam B-box zinc finger 63 107 IPR000315 GO:0008270
Vvi14g1158 344 CDD Bbox1_BBX-like 22 65 - -
Vvi14g1158 344 ProSiteProfiles Zinc finger B-box type profile. 61 108 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi14g1158 Vvi-Chr14 22696209 22697243 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi14g1158 1 271 C2C2-CO-like Transcription Factor Family AT3G02380 52.364 4.33e-81 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vvi14g1158 zf-B_box 5.4e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g1158 - - vvi:100248114 521.931