Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g1139 ATGAGAAGACAAGGGATTAGAGTTTTGAAATTTTGGGATTTTGATCTTCATCATTTGGGATTCAGTAAAACTAAAGTACGGATACTTAAATTTGAATTCTTTTCTTTGCCTCCTTCTCAGTCACCAAATATAGGGTTCGGGTCCGTTTGGCCGATGAAAAATCGTAGCACTGAAATGAATACTCGGAACCATATGGGAGTTGGGGTTTTCTCGAATGTTGTGAGATTCAGAGAATCTGAAGAATCTGCTATTCAAGGCATGGAATCTATTATTGCTACTGTCAGCGGCTACCATGGCGTGGAGCGGTCCAACCTCATTAAGTTGATATCACAGACCGGTGCAAAATATGTTGGAACAATGTCAAGATCGATTACACATTTAGTATGTTGGAAATTTGAAGGAAGGAAATACAGTCTTGCTAAGAAGTTTAAGACATTGATTGTTAACCACAGGTGGTTTGAAGATTGCATCAAGGCGGGGAAGCGCCTTCCAGAGAACTCTTATCTCCTGCAGAGTGGGCAAGAAGTGGGGCCATTATCATTAGAAGTTCCACTGGTTTCTGAGAAGGCAAATCCTCTGACTAAGAAGAATGGTAGAGCACATTCTGTCCGAGGCAGTGCTTGTGATATCTCTAAAGAACTGTGGGTTGATAAGGGGTGGGGAGGTGCTGATGATGCTGTTTGGATTGACTCTTTTTTGCTAAATGAGCATGAAGAATCAAGTTTTCGTTCCCACCGACATTCTGTAAGGCAGAAAAGGAGTAATTGCAATTATATCTACAGCAGTACTTCATCTGAACCTTCTCGTAAAGGTCGGAGGCTTGTTAAAAAGAATGCCAGTAGAGATATGTTGGAGTCTTTGCTTTCTGACTCTGATAAAGAATGCAACCTAATTACAGCTCGTAACAGACGAAGTAATCTTGGGCCTCCGCCTAACTGTTCAGATGGTGTCAGGGATGAGAGTACTTCGACAATTAGAAGATTAACATCCGATGATGGGTTTTATGACCATGGTAGTCATAGAGATGGAACTTTGGAAGATGTTGAAGAGATAAGAGATTTGAACCACAGTCTTGCTTCTAAGGATTCAAAATTGCATGGTGAGAAATTATCAACTGTTCCAGAAAGAACATCTCAGGATGAGGGTTTTGATATTGAGGATAACATAAATAGTGAAATCAAAGACGGGGATCGGATTCGACAAATGATCCCTACTTCAGCAAATTTATCATGTGTAATATGCTGGACAGAATTCTCTTCAACCAGAGGTGTCTTGCCCTGTGGACATCGCTTCTGCTACTCTTGTATCCAAAGCTGGGCTGACCACATGGCTTCAAGGAGAAAGACTGCGACATGCCCTTTGTGCAAGGCTAGTTTTGTGAGCATCACAAAAGTGGATGATGCTGCTTATTCTGATCAGAAAATATACTCACAAACTATTCCGTATGCCCCATCAACATCAGATATTCTCATCCTTGCTGATCAAGAATCTCCCAGTTTTGGAGCCCAGTCCTCACGACTACCAGTTTGTTGTGAATGCCGTTGCCGAGAACCTGAGGATCTTCTTGTAAGCTGCCATCTTTGCAGGATACGATGCGTTCATTCGTATTGCTTGGACCCCCCCTTGTTGCCATGGACATGCATTCACTGCAAGGATCTCCGAATGCTCTACCATCACTTCCATTAG 1686 0.4229 MRRQGIRVLKFWDFDLHHLGFSKTKVRILKFEFFSLPPSQSPNIGFGSVWPMKNRSTEMNTRNHMGVGVFSNVVRFRESEESAIQGMESIIATVSGYHGVERSNLIKLISQTGAKYVGTMSRSITHLVCWKFEGRKYSLAKKFKTLIVNHRWFEDCIKAGKRLPENSYLLQSGQEVGPLSLEVPLVSEKANPLTKKNGRAHSVRGSACDISKELWVDKGWGGADDAVWIDSFLLNEHEESSFRSHRHSVRQKRSNCNYIYSSTSSEPSRKGRRLVKKNASRDMLESLLSDSDKECNLITARNRRSNLGPPPNCSDGVRDESTSTIRRLTSDDGFYDHGSHRDGTLEDVEEIRDLNHSLASKDSKLHGEKLSTVPERTSQDEGFDIEDNINSEIKDGDRIRQMIPTSANLSCVICWTEFSSTRGVLPCGHRFCYSCIQSWADHMASRRKTATCPLCKASFVSITKVDDAAYSDQKIYSQTIPYAPSTSDILILADQESPSFGAQSSRLPVCCECRCREPEDLLVSCHLCRIRCVHSYCLDPPLLPWTCIHCKDLRMLYHHFH* 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g1139 561 SMART ring_2 411 455 IPR001841 -
Vvi14g1139 561 ProSiteProfiles BRCT domain profile. 79 170 IPR001357 -
Vvi14g1139 561 SUPERFAMILY BRCT domain 85 171 IPR036420 -
Vvi14g1139 561 MobiDBLite consensus disorder prediction 302 322 - -
Vvi14g1139 561 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 388 484 IPR013083 -
Vvi14g1139 561 ProSiteProfiles Zinc finger RING-type profile. 411 456 IPR001841 -
Vvi14g1139 561 SMART BRCT_7 81 160 IPR001357 -
Vvi14g1139 561 Gene3D BRCT domain 83 175 IPR036420 -
Vvi14g1139 561 PANTHER F5A8.9 PROTEIN 236 558 - -
Vvi14g1139 561 Pfam twin BRCT domain 91 152 IPR001357 -
Vvi14g1139 561 ProSitePatterns Zinc finger RING-type signature. 427 436 IPR017907 -
Vvi14g1139 561 Pfam Ring finger domain 410 456 IPR001841 -
Vvi14g1139 561 SUPERFAMILY FYVE/PHD zinc finger 499 552 IPR011011 -
Vvi14g1139 561 SUPERFAMILY RING/U-box 410 463 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi14g1139 124 176 Core DNA Replication Machinery Family AT4G02110 57.407 3.22e-12 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g1139 - - vri:117929805 1129.39