Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g1128 ATGGCTTCAGCGTCACCTTCTCCAAATTCTCCTCCTTCCACTGCTACCTCCCCGTCATCTTCCTCTTCTTCAAATTCTTCCAGTAATTCACAACCTCCTGCTGGCTCTGATCCTAATCAGACTTCTGACCAAGTAGCACCCTCAACCCCTTCTAATCCTTCACCCCCACCTACTCAATCTCCTCCACCATCAGTTACTGCCTCTCCTCCAGAATCACCACCACCGCCGCCTGCATCAATACCACCACCAACTTCACCACCACCATCACCTCCAGCATCACCACCACCATCTCCTCCAGCATCACCACCACCATCACCTCCAGCATCACCGCCACCATCACCTCCAACATCTGCCCCTCCTCCAGCTGTGAACTCAACACCCCCTCCAGTTTTGTCCCCACCACCTCCATCAGAAGGTTCTCCCTCTCCCCGGGTTTCCCCAGCCCCTCCTGTAGGGACCCCACCTTCCCCTCCAGCTGTTTCACCTTCTACACCTCCTCCAGACAATGTTCCATCTCCAACTTCATCCAGTTCCCCACCCCCACCGGTGGCAAGCTCACCTCAAAATTCTCCTTCACCCCCTCCTCCATCAGGTTCTGAACCTCTTTCTCCACCCCCCACCCCAGCAAGATCCACCATATCACCTCCTCCTCCTTCAGTCCCCTCATCCTCTTCACCTCCTTCTATTTCTCCTCCTGCTCCTCCAAGTAACTCATCAGACACTGGAACCCCTACTTCCTCTCCCTTACCCTCCATTCCATCAGAAAAACCAACTGCAAGATCAACTACAAATACAACAGCAAATTCCACATCCGCCGATAATGGGGGCATTAAGGCTGGAACAATGGTGACCATTGGCATTGTTGTTGGGCTTCTTGTGCTTAGTCTTCTTGTGATGGCTGCATGGTTTGTACAAAAACGAAAGAAAAAGAGAGCTGGACTAAATATTGGCTATACCATGCCTTCTCCATTTGCATCCTCCCAAAATTCAGATTCAGTATTTCTAAGGCCCCATTCTTCATCAGCTCTACCTTTGGGAAGTGGATCTGGTAGTGATTTCGTGTATTCACCACCAGATCCAGTTGGCAGCAATTCAAGACCATGGTTCTCATATGAAGAACTTGTAGAGGCCACAGATGGGTTTTCATCACAGAATCTTTTGGGTGAAGGTGGATTTGGTTGTGTGTACAAAGGTTTCCTAGCAGATGGAAGAGAAGTAGCTGTAAAACAGCTAAAGATTGGTGGTGGACAGGGGGAACGCGAATTCAAAGCAGAAGTTGAGATTATTAGTCGTGTACACCATCGGCATTTGGTTTCACTTGTGGGTTACTGTATATCTGAGCATCAAAGATTACTTGTCTATGATTTCGTACCAAACGATACCCTTCATTACCATCTCCATGGTGAAGGTAGACCGGTGATGGATTGGGCAACTCGAGTAAAGGTTGCTGCTGGTGCAGCACGGGGAATAGCTTATCTACACGAGGACTGCCATCCACGGATTATTCACAGAGATATCAAGTCATCAAATATTCTTTTGGATATGAACTTTGAAGCTCAGGTTTCAGATTTTGGGCTTGCAAAGTTAGCATTGGATGCCAATACACATGTAACCACTCGTGTGATGGGAACCTTTGGATATATGGCTCCAGAGTATGCATCAAGTGGCAAGTTGACGGAAAAATCCGATGTTTATTCATTTGGGGTTGTGCTTTTAGAACTGATTACAGGTCGTAAACCTGTAGACGCATCTCAACCATTGGGAGATGAAAGCCTGGTTGAATGGGCTCGACCATTGCTTGCTCAAGCCCTTGATTCTGGAAACTTTGAAGGGTTGATAGATCCAAGACTGGAAAAGAACTTTGTTGAAAATGAGATGTTCCGGATGATTGAGGCAGCTGCAGCATGTGTGCGTCACTCAGCTTCTAAGAGGCCAAGGATGAGTCTGGTGGTGCGAGCCTTGGACTCCATGGATGAATTGTCAGACCTTACCAATGGAATGAAACCGGGACAAAGCGAAGTCTTTGATTCGGCACAACATTCTGCACAAATTAGAATGTTCCAAAGGATGGCGTTTGGTAGTCAAGAATACAGTTCAGAATTTTTCAATCAAAGTCAAAGTAGCTCGAGGAGTTTTTCCAGAATGCCTTATTAG 2154 0.4745 MASASPSPNSPPSTATSPSSSSSSNSSSNSQPPAGSDPNQTSDQVAPSTPSNPSPPPTQSPPPSVTASPPESPPPPPASIPPPTSPPPSPPASPPPSPPASPPPSPPASPPPSPPTSAPPPAVNSTPPPVLSPPPPSEGSPSPRVSPAPPVGTPPSPPAVSPSTPPPDNVPSPTSSSSPPPPVASSPQNSPSPPPPSGSEPLSPPPTPARSTISPPPPSVPSSSSPPSISPPAPPSNSSDTGTPTSSPLPSIPSEKPTARSTTNTTANSTSADNGGIKAGTMVTIGIVVGLLVLSLLVMAAWFVQKRKKKRAGLNIGYTMPSPFASSQNSDSVFLRPHSSSALPLGSGSGSDFVYSPPDPVGSNSRPWFSYEELVEATDGFSSQNLLGEGGFGCVYKGFLADGREVAVKQLKIGGGQGEREFKAEVEIISRVHHRHLVSLVGYCISEHQRLLVYDFVPNDTLHYHLHGEGRPVMDWATRVKVAAGAARGIAYLHEDCHPRIIHRDIKSSNILLDMNFEAQVSDFGLAKLALDANTHVTTRVMGTFGYMAPEYASSGKLTEKSDVYSFGVVLLELITGRKPVDASQPLGDESLVEWARPLLAQALDSGNFEGLIDPRLEKNFVENEMFRMIEAAAACVRHSASKRPRMSLVVRALDSMDELSDLTNGMKPGQSEVFDSAQHSAQIRMFQRMAFGSQEYSSEFFNQSQSSSRSFSRMPY* 718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g1128 717 Gene3D Transferase(Phosphotransferase) domain 1 457 675 - -
Vvi14g1128 717 ProSitePatterns Serine/Threonine protein kinases active-site signature. 501 513 IPR008271 GO:0004672|GO:0006468
Vvi14g1128 717 CDD STKc_IRAK 387 657 - -
Vvi14g1128 717 MobiDBLite consensus disorder prediction 1 48 - -
Vvi14g1128 717 SMART serkin_6 381 627 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi14g1128 717 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 290 698 IPR047117 -
Vvi14g1128 717 MobiDBLite consensus disorder prediction 1 277 - -
Vvi14g1128 717 FunFam Proline-rich receptor-like protein kinase PERK8 356 456 - -
Vvi14g1128 717 Pfam Protein tyrosine and serine/threonine kinase 384 652 IPR001245 GO:0004672|GO:0006468
Vvi14g1128 717 SUPERFAMILY Protein kinase-like (PK-like) 358 654 IPR011009 -
Vvi14g1128 717 Gene3D Phosphorylase Kinase; domain 1 360 456 - -
Vvi14g1128 717 ProSiteProfiles Protein kinase domain profile. 381 660 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi14g1128 717 ProSitePatterns Protein kinases ATP-binding region signature. 387 409 IPR017441 GO:0005524
Vvi14g1128 717 FunFam proline-rich receptor-like protein kinase PERK8 457 669 - -
Vvi14g1128 717 MobiDBLite consensus disorder prediction 49 238 - -
Vvi14g1128 717 MobiDBLite consensus disorder prediction 239 277 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi14g1128 Vvi-Chr14 22377895 22389046 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi14g1128 253 714 Trihelix Transcription Factor Family AT5G38560 70.513 0.0 692
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Vvi14g1128 PK_Tyr_Ser-Thr 2.5e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g1128 - - vvi:100246425 893.649