Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g1114 ATGCCTCCCGGAATTTCTGTAAAAAGTGGAGGAGCATCAATTGAAGTGCAAAATGAACAACCAGCAAGTTCAAGGTCACTGAAGGAGAAAACATCAAAAGCTGAAAGGCGTGCACTTCAGGAGGCTCAGAGAGCTGCAAAAGCTGCGGCAAAAGCTGAAGTAAGTAAGGCACCCATTGCTGCTTCTGGGGTTGCAACTTCAGTTAATGCAAAACCAGCTAAGGTTTCAAAGCTTTCTTCACAGAAGAAAGATAGTGCTTCAGTCACAGCTTCTGAGAAAAAGGGTGTTGACCGTCCACCAGAGAAGGATAGAAAGAAAGATGTACCTCATCCACGCATGCAATTTGATGATAAGAGTCGAGTGGAGAAGGCAAAAAGGCGTGCAGTAGTAAGGCCAATTGAAGTTAGGAACAGAGTTGAGTTATTTAGACATTTACCTCAGTATGAACGTGGAACTCTGCTTCCTGATCTTGAGTCAAAGTTTTTCCTACTTGATCCAATGCATCCTGCTGTTTACAAGGTTGGCTTACAGTATTTAGCAGGAGACGTATCTGGTGGCAATGCTCGTTGTATTGCAATGCTTCAGGCATTCCAAGAGGCCATCAAAGACTATTCCACTCCACCTGAAAAAACTCTTGTCAGAGACTTAACTGCTAGATTAAGCAGTTATGTTTCATTTCTAATTGAGTGCAGACCCCTTTCAATAAGCATGGGAAATGCAATTAGGTTTTTAAAAAGTCGAATTGCCAAGTTACCTTTATCTTTGTCTGAGTCTGAAGCGAAAGCAAGTCTTCAGTCAGATATCAATCGGTTTATAAACGAGAAGATAGTACTTGCGGACAAAGTAATAGTCAGGCATGCTGTAACAAAAATCAGGGATGGGGATGTCCTACTTACATATGGGTCTTCCTCTGCTGTTGAGATGATACTATTGTATGCCCATGAGCTCGGCAAACAGTTTCGTGTTGTTGTAGTGGACTCTCGTCCAAAGCTTGAAGGGCAACTCTTACTTCGAAGATTGGTGGGAAAAGGCCTTAGCTGCACATACACCCATATAAATGCTGTTTCATATATCATGCATGAAGTTACTCGAGTTTTCCTTGGGGCTTCATCTGTGTTGTCCAATGGAACAGTTTACTCGAGGGTTGGGACTGCATGTGTTTCTATGGTTGCTCATGCATTCCGAGTTCCAGTGTTAGTATGTTGTGAAGCATATAAATTTTATGAGAGAGTACAGCTTGATTCGATTTGCTCTAATGAACTTGGTGATCCTGATGCAATTTCAAAAGTTCCTGGTAGGGAGGAAATTAACTATTTGGATGATTGGGCGAAGAGTGAAAATTTGCAGCTTTTGAATCTGATATATGATGCAACACCTTCAGATTATGTTTCGATGATTATAACAGATTATGGCATGGTCCCACCTACAAGTGTGCCTGTGATTGTGCGAGAGTACCGGAGAGAGCACTTGTGGATATAG 1479 0.4199 MPPGISVKSGGASIEVQNEQPASSRSLKEKTSKAERRALQEAQRAAKAAAKAEVSKAPIAASGVATSVNAKPAKVSKLSSQKKDSASVTASEKKGVDRPPEKDRKKDVPHPRMQFDDKSRVEKAKRRAVVRPIEVRNRVELFRHLPQYERGTLLPDLESKFFLLDPMHPAVYKVGLQYLAGDVSGGNARCIAMLQAFQEAIKDYSTPPEKTLVRDLTARLSSYVSFLIECRPLSISMGNAIRFLKSRIAKLPLSLSESEAKASLQSDINRFINEKIVLADKVIVRHAVTKIRDGDVLLTYGSSSAVEMILLYAHELGKQFRVVVVDSRPKLEGQLLLRRLVGKGLSCTYTHINAVSYIMHEVTRVFLGASSVLSNGTVYSRVGTACVSMVAHAFRVPVLVCCEAYKFYERVQLDSICSNELGDPDAISKVPGREEINYLDDWAKSENLQLLNLIYDATPSDYVSMIITDYGMVPPTSVPVIVREYRREHLWI* 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g1114 492 PANTHER TRANSLATION INITIATION FACTOR EIF-2B 9 489 - -
Vvi14g1114 492 MobiDBLite consensus disorder prediction 11 25 - -
Vvi14g1114 492 SUPERFAMILY NagB/RpiA/CoA transferase-like 166 485 IPR037171 -
Vvi14g1114 492 Gene3D - 279 485 IPR042529 -
Vvi14g1114 492 Pfam Initiation factor 2 subunit family 183 475 IPR000649 GO:0044237
Vvi14g1114 492 MobiDBLite consensus disorder prediction 87 121 - -
Vvi14g1114 492 MobiDBLite consensus disorder prediction 26 42 - -
Vvi14g1114 492 MobiDBLite consensus disorder prediction 1 121 - -
Vvi14g1114 492 MobiDBLite consensus disorder prediction 72 86 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi14g1114 Vvi-Chr14 22174397 22184819 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi14g1114 1 492 Eukaryotic Initiation Factors Gene Family AT5G38640 76.876 0.0 766
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g1114 K03680 - vvi:100246278 902.508