Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g1112 ATGGCTGTTTCAAACAATCCTATAATGACAAACCAGGATGTTGGTAGAATAAACCAAGACTATTATGGTCCTTCGAATTTTCTCCCTGGTAAGAGAGCTGTCAAGAAAGATCGGCACAGTAAGATTACCACCGCAAAAGGCCCAAGAGAAAGAAGAGTGAGATTGTCCATCAAAATTGCGCGCAAGTTCTTTGATCTCCAAGACATGCTAGGTTTCGACAAAGCAAGTAGAACCCTAGAATGGCTGCTCATGAAGTCCAAAACCGCCATTAAGGAAGTAGTACGGATGAAGCATAGCTGCAACGAAGAAGCCAAGAGTTTGTCTTCTGCTTCTGAATGCGAAGTAGTGTCCGAGATGAACGACGCCGCTGAGAGTGGAGATCCACAGGAAATACTGTTCAGGAGGAAGTCACCAGGATGGGTTTCCAAAGAGAAAAAGATGAAAGAATCAAACAAAGCTGCATTTCATCTTCTTGCAAGGGAGTCAAGGGCAAAGGCCAGAGCAAGGGCAAGGGAAAGGACAAGAGAAAAAATGTGCACCAGAAGGCTTGATGAGCTGAAAAAATTTCCTGATGCTAACCACCCTATCTTAAGCCAATTAAGGTCTTCCTGTCAATTTCAAACTCATGAGAAATTGGGTTCCCATACCCACAACATGGCATCCTCCTTGAAGCTGGTTGGTCAAGTGGAAGAATCAAGCTCTCGCCCGCTAGCTAATCACACCCAAAGAGAAGACATCATTGAGGAATCCATTGTCATCAAAAGGAAGCTGAAGCCGTCTCCAATATTTGCTTGTCCGCAAAACCTCCTATTTTCTAAAGATTTAAGTCTCGGAAACAGCAACAGCTATTTTCCCCACCCACCTCAAAATTGGGACATTAATACTCCCAGCGCACGCTCTAGCTTTTGTGCTATGACCAACATGAATCTATCAACAGAATTCCAAGTGTTTGGCAAACCCTGGGAGGCTTACAACAATCTCAGTCTCCGGTAA 993 0.4421 MAVSNNPIMTNQDVGRINQDYYGPSNFLPGKRAVKKDRHSKITTAKGPRERRVRLSIKIARKFFDLQDMLGFDKASRTLEWLLMKSKTAIKEVVRMKHSCNEEAKSLSSASECEVVSEMNDAAESGDPQEILFRRKSPGWVSKEKKMKESNKAAFHLLARESRAKARARARERTREKMCTRRLDELKKFPDANHPILSQLRSSCQFQTHEKLGSHTHNMASSLKLVGQVEESSSRPLANHTQREDIIEESIVIKRKLKPSPIFACPQNLLFSKDLSLGNSNSYFPHPPQNWDINTPSARSSFCAMTNMNLSTEFQVFGKPWEAYNNLSLR* 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g1112 330 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 29 267 IPR005333 GO:0003700
Vvi14g1112 330 ProSiteProfiles R domain profile. 160 177 IPR017888 -
Vvi14g1112 330 Pfam TCP family transcription factor 34 180 IPR017887 -
Vvi14g1112 330 ProSiteProfiles TCP domain profile. 35 93 IPR017887 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi14g1112 Vvi-Chr14 22124918 22125983 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi14g1112 31 179 TCP Transcription Factor Family AT1G67260 48.408 1.62e-33 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Vvi14g1112 TCP 1e-46 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g1112 - - vvi:104881610 645.58