Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g1111 ATGTCTGACTATTCATGGCGAGTAGGTGGGACTAGTGGGATATCAGACTCCGAAAATGGCGTGGGGGCTGTGTACTTGCGAAAGTTAACTTCTTCTAAATATAAAGGAGTGGTTCCCCAGCCTAATGGCCGGTGGGGAGCACAAATATACGAGAAGCACCGGCGCATTTGGCTGGGAACTTTCAATGAAGAAGGAGAAGCTGCCAAGGCCTATGATGTTGCGGCGAGAAGGTTCCGGGGCCATGCTGCCCTAACAAACTTCATGGTTTCAGGAAAGGGTATCCAAGACGACATTGAAACAACGTTCTTGAACTCGCATTCTAAGGCTGAGATAGTGGACATGCTCCGAAAACACACCTACAATGATGAGCTTGAGCAAAGTGCGCACAATTATGGAAGCAAAGAAAGTGGTGCGGATGTCATGGAGTCCAAACCAAGTGTCTGTGAAAGGGTACAACTCTTTGACAAGGCGGTGACACCAAGTGATGTAGGGAAACTAAACCGAATGGTGATACCAAAGCAACATGCAGAGAAGCACTTGCCTTTGCAACTTGCAAGCTCTTCCAAGGGTGGTTTATTGAATTTTGAGGACAACGGCGGGAAGATTTGGAGGTTTAGGTACTCCTTTTGGAATAGTAGCCAGAGCTATGTGCTAACAAAAGGTTGGAGGCGCTTTGTAAAGGAGAAGAACTTGAAAGCTGGGGATATCGTTAGCTTTCATCGGTCAACTGGGTCGGATAAACGGCTATTCATAGAGTGGGAGCAGCGAGACAGTTCCAGAAAGCCATCAATGAAGCAGGTCGAGAGTGGTCAGATGGTTAGATTATTTGGAGTGAACTTGTTTAGTAAGTCCTAG 855 0.469 MSDYSWRVGGTSGISDSENGVGAVYLRKLTSSKYKGVVPQPNGRWGAQIYEKHRRIWLGTFNEEGEAAKAYDVAARRFRGHAALTNFMVSGKGIQDDIETTFLNSHSKAEIVDMLRKHTYNDELEQSAHNYGSKESGADVMESKPSVCERVQLFDKAVTPSDVGKLNRMVIPKQHAEKHLPLQLASSSKGGLLNFEDNGGKIWRFRYSFWNSSQSYVLTKGWRRFVKEKNLKAGDIVSFHRSTGSDKRLFIEWEQRDSSRKPSMKQVESGQMVRLFGVNLFSKS* 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g1111 284 Pfam B3 DNA binding domain 154 254 IPR003340 GO:0003677
Vvi14g1111 284 CDD B3_DNA 153 242 IPR003340 GO:0003677
Vvi14g1111 284 FunFam AP2 domain-containing protein RAP2.8 32 89 - -
Vvi14g1111 284 SUPERFAMILY DNA-binding pseudobarrel domain 152 252 IPR015300 -
Vvi14g1111 284 Gene3D AP2/ERF domain 32 89 IPR036955 GO:0003700|GO:0006355
Vvi14g1111 284 SMART B3_2 154 257 IPR003340 GO:0003677
Vvi14g1111 284 CDD AP2 32 87 IPR001471 GO:0003700|GO:0006355
Vvi14g1111 284 Gene3D - 147 266 IPR015300 -
Vvi14g1111 284 ProSiteProfiles B3 DNA-binding domain profile. 154 257 IPR003340 GO:0003677
Vvi14g1111 284 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 28 280 IPR044800 GO:0003700
Vvi14g1111 284 Pfam AP2 domain 32 81 IPR001471 GO:0003700|GO:0006355
Vvi14g1111 284 SUPERFAMILY DNA-binding domain 32 89 IPR016177 GO:0003677
Vvi14g1111 284 ProSiteProfiles AP2/ERF domain profile. 33 88 IPR001471 GO:0003700|GO:0006355
Vvi14g1111 284 SMART rav1_2 33 94 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi14g1111 Vvi-Chr14 22050931 22051785 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi14g1111 1 284 B3 DNA Binding Superfamily AT1G25560 59.259 3.70e-115 334
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-RAV Vvi14g1111 B3 1.8e-28 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g1111 K09287 - vvi:100251473 578.556