Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g1110 ATGAAGGAGCGTCAGCGTTGGCAACCAGAAGAAGACGCACTACTGAGAGCCTACGTGAAGCAGTATGGAGCCAAGGAATGGAACCTCATCTCCCACCGCATGGGCAAGTCCCTTGACCGCGACCCCAAGTCCTGCCTCGAGCGCTGGAAGAACTACCTCAAGCCCGGCATCAAGAAGGGTTCTCTCACCCTAGAGGAGCAGAACTTGGTCATTTCTCTTCAGGCCAAGTACGGCAACAAGTGGAAGAAGATCGCCTCTGAAGTCCCCGGCCGTACTGCCAAGCGTCTCGGCAAGTGGTGGGAAGTTTTCAAGGAAAAGCAGCTCAAGCAGCTCCACAAGACCACCCATCTCCGCCACGACCACTCTGACTCCCCCTCCTCCAACGCCGTCGCCGCGGCCTCCGCTTCCTCCCCAGACCACGGTAAATACGACCACATCTTGGAGACTTTCGCTGAGAAGTACGTTCAGCCCAAGCTGCTAGCCTTTCAGCCCCTTCCTCTGCCCATAATGCCCAACCTCTCCCTCTCCGACCCACCTCCGGTGCTCTCTCTCGGCTCCGTCGGTATCTCGGATGCCGGCGTGCCTGTGGGTTCAACCACGCCCTCCCCAGTCCTCCCTGCGTGGATGAACGCCACAAACATGGGTTCAACGACGTCATCTATATCCTCCTCCTCCTCCACGCCTTCTCCTTCGGTAAGCCTCTCCTTGTCCCCCTCGGAACCGGCCGTCCTGGACCCAGTCCATCCAGAGGCGTCCCGGCTGATGCCGGTCCAACAAATGGGGACCCTGATACAGTACTGCAAAGAGCTAGAGGAAGGAAGGCAGAACTGGGTGCAACACAAGAAGGAAGCGACATGGAGGCTGAGCCGACTAGAGCAACAACTGGAGTCCGAGAAGTCGAGAAAAAGGAGAGAGAAAACGGAGGAGATAGAAGGAAAGATAAGGTGTCTGAGAGAGGAAGAGATGGCCCATCTGGGGAGGATTGAGAGCGAGTACAGAGAGCAGCTGATTGCAGTACAGAGAGACGCCGAAAGCAAAGAAGCCAAGCTAATGGAAACATGGTGCAGCAAGCATGTGAAGCTGGCAAAGCTTGTGGAGAAAATTGGAATCCACACTCCCACTCAGGCCTTCACCCTACCAAAAGATTTGCACTAA 1155 0.561 MKERQRWQPEEDALLRAYVKQYGAKEWNLISHRMGKSLDRDPKSCLERWKNYLKPGIKKGSLTLEEQNLVISLQAKYGNKWKKIASEVPGRTAKRLGKWWEVFKEKQLKQLHKTTHLRHDHSDSPSSNAVAAASASSPDHGKYDHILETFAEKYVQPKLLAFQPLPLPIMPNLSLSDPPPVLSLGSVGISDAGVPVGSTTPSPVLPAWMNATNMGSTTSSISSSSSTPSPSVSLSLSPSEPAVLDPVHPEASRLMPVQQMGTLIQYCKELEEGRQNWVQHKKEATWRLSRLEQQLESEKSRKRREKTEEIEGKIRCLREEEMAHLGRIESEYREQLIAVQRDAESKEAKLMETWCSKHVKLAKLVEKIGIHTPTQAFTLPKDLH* 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g1110 384 Coils Coil 281 308 - -
Vvi14g1110 384 MobiDBLite consensus disorder prediction 216 241 - -
Vvi14g1110 384 ProSiteProfiles Myb-like domain profile. 54 104 IPR001005 -
Vvi14g1110 384 PANTHER PROTEIN ROUGH SHEATH 2 HOMOLOG 1 375 - -
Vvi14g1110 384 SUPERFAMILY Homeodomain-like 4 98 IPR009057 -
Vvi14g1110 384 CDD SANT 6 53 IPR001005 -
Vvi14g1110 384 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 58 108 IPR017930 -
Vvi14g1110 384 Pfam Myb-like DNA-binding domain 7 67 - -
Vvi14g1110 384 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 57 IPR017930 -
Vvi14g1110 384 ProSiteProfiles Myb-like domain profile. 1 53 IPR001005 -
Vvi14g1110 384 CDD SANT 63 104 IPR001005 -
Vvi14g1110 384 SMART sant 58 106 IPR001005 -
Vvi14g1110 384 SMART sant 3 55 IPR001005 -
Vvi14g1110 384 MobiDBLite consensus disorder prediction 113 138 - -
Vvi14g1110 384 Gene3D - 4 58 - -
Vvi14g1110 384 Gene3D - 62 122 - -
Vvi14g1110 384 MobiDBLite consensus disorder prediction 216 238 - -
Vvi14g1110 384 FunFam MYB-related transcription factor 4 58 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi14g1110 Vvi-Chr14 22042969 22044123 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi14g1110 1 367 MYB Transcription Factor Family AT2G37630 46.819 3.16e-105 313
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vvi14g1110 Myb_DNA-bind_6 3.7e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g1110 K09422 - vvi:100258292 705.671