Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g1097 ATGGCTGAAGATGAGACAAAAACAGAGAACGATTGTATTGCCCCGACAGCTGATGATGGGATCCCAATCAAGTCAGAAAACACAAAGAGAGAGAGTGTCTCTTTAGCTGATTTTTTCACTGCAGAGCAAATAAAGGAACATATATGGAGTCTCAGGGGATCCATTCAGCAGAAAGTAGCAGGACAGAAAATAACAAATTCCACCAGTGAAAATTCATGCCAGCTGTGCATGGCGGATAACCTTTTGTTTGCTCCGGAACCAATGTATTGTTCCTTGTGTGGAACCCGTATCAAACATGGTGTGCTTTATTACTCTACCCAAGCTGAAAATGGAGCAACGCATTGTTGTTGTACTTCATGCTATAAGATGTCTCGTGGTGGGAATATCACATTCTGTGGGTTTACAATCTCCAAGGCAAAGCTGGACAAGAAAAAGAATGACAAAGAAACTGAAGAATCGTGGGTTCAATGTGATAAATGTGAAGGCTGGCAACACCAGATATGTGCTCTCTTTAATGATAAAAGGGATATGATAGAAAATGCCAAGTACATTTGTCCCATATGCTACTTAAAAGAAATAGAAGCCAACCAGTGTATGTCCTTACCAAAGGATGCTTTTTCTGGTGCAAAAGATCTGCCAAGTACAATGCTTAGCAACCACATAGAGCAAAGGCTTTTTAGTCGTCTTGAGCAAGAGAGAAAAGAGAGAGCCAGTGCTGCAGGAAAGAACTTTGGCGAGGTTCCTGGAGTGGAAGATCTTGTTGTGAGAGAGGTGTCGTCCGTCGACAAACAATTAAAAGTGAATAAGGAGTTCTTGGATTTCTTTCATGATGATAATTACCCAGCCGAATTCCCCTACAAATCAAAGATGATTCTTCTCTTCCAGAAGATTGAAGGGGTAGATGTATGCCTTTTCGGAATGCATGTCCAGGAGTTTGGCTCAGAATGTCGACAACCAAATCAACGCAGTGTTTATATCTCATATCTCGATTCTGTCAAGTACTTCAGGCCTGACATTGCTACTGTTGGTGGAGAAGCCCTTCGTACCTTTGTCTATAATGAAATATTGATAGGGTACCTTGATTATTGTAAGAAACGAGGTTTCACAACATGCTATTTATGGTCTTGCCCCCCTTTGAAAGGAGAAGATTATATTTTATATTGCCATCCCAGAACTCAGAAAACACCAAAAACTGATAAGCTGCGGCAATGGTATAGGTCAATGCTAGCAAAAGCAGCCAAAGAAAATATTGCGGTGGAGCTCACTAATTTATATGATCACTTCTTTATTCCAACTGGAAAATGCAACACCAAGGTGACAGCAGCTCGTTTGCCTTATTTTGATGGTGACTATTGGACAACTGCTGCTGAGGATTTGATCAGGAATATTGTACGTGAAAGTGGAGGAAATTTACAAAAGGCAACAAAACTAGTGACAAAGAGAACTTTAAAAGCAATGGGTCATATTAATCCCTCAGATGATGCTGCAAAAGATATTCTACTGATGCAAAGATTGGGTCAAGCTATCTTTCCCAAGAAGGAAGACTTTATTATGGCCCACTTGCAGTCTTTTTGCTCATTCTGCCAAGAAGCAATACTATCTGGAAGGCGATGGGTTTGTAATCAGTGCAAAAATTTTCAGCTATGTGAAAGATGCCATGATATGGAGCAAAACCCAGATGAACAGAACATGCACTCTGTCAATAGCATGGAAAAACATGTACTCTCGCAGGTTGTGAACAATGTACCTGTTGATACAGAGGATAAGGATGCTACTTTAAATAATGGTTTCTTTGAGAATAGGCAATCTATCTTGAGCTTTTTACAGACAAACCATTATCAGTTTGATACACTGCGCCGGGCCAAGCATTCCTCAATGATGATGCTTCATTATCTCCACAATTACTCAGGTGTTTGCTTCTATTCATTTGGTATAATGTTGGATTTGAATTTTGATGCCCTTGATGAGTTCTAG 1974 0.4022 MAEDETKTENDCIAPTADDGIPIKSENTKRESVSLADFFTAEQIKEHIWSLRGSIQQKVAGQKITNSTSENSCQLCMADNLLFAPEPMYCSLCGTRIKHGVLYYSTQAENGATHCCCTSCYKMSRGGNITFCGFTISKAKLDKKKNDKETEESWVQCDKCEGWQHQICALFNDKRDMIENAKYICPICYLKEIEANQCMSLPKDAFSGAKDLPSTMLSNHIEQRLFSRLEQERKERASAAGKNFGEVPGVEDLVVREVSSVDKQLKVNKEFLDFFHDDNYPAEFPYKSKMILLFQKIEGVDVCLFGMHVQEFGSECRQPNQRSVYISYLDSVKYFRPDIATVGGEALRTFVYNEILIGYLDYCKKRGFTTCYLWSCPPLKGEDYILYCHPRTQKTPKTDKLRQWYRSMLAKAAKENIAVELTNLYDHFFIPTGKCNTKVTAARLPYFDGDYWTTAAEDLIRNIVRESGGNLQKATKLVTKRTLKAMGHINPSDDAAKDILLMQRLGQAIFPKKEDFIMAHLQSFCSFCQEAILSGRRWVCNQCKNFQLCERCHDMEQNPDEQNMHSVNSMEKHVLSQVVNNVPVDTEDKDATLNNGFFENRQSILSFLQTNHYQFDTLRRAKHSSMMMLHYLHNYSGVCFYSFGIMLDLNFDALDEF* 658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g1097 657 ProSiteProfiles Zinc finger ZZ-type profile. 520 583 IPR000433 GO:0008270
Vvi14g1097 657 CDD PHD_HAC_like 117 188 - -
Vvi14g1097 657 SMART KAT11_2 239 532 IPR013178 GO:0004402|GO:0006355|GO:0016573
Vvi14g1097 657 ProSitePatterns Zinc finger ZZ-type signature. 525 552 IPR000433 GO:0008270
Vvi14g1097 657 Pfam PHD-finger 147 189 IPR019787 -
Vvi14g1097 657 MobiDBLite consensus disorder prediction 1 24 - -
Vvi14g1097 657 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 141 189 IPR013083 -
Vvi14g1097 657 ProSiteProfiles CBP/p300-type histone acetyltransferase (HAT) domain profile. 206 637 IPR031162 GO:0004402
Vvi14g1097 657 Pfam Histone acetylation protein 248 472 IPR013178 GO:0004402|GO:0006355|GO:0016573
Vvi14g1097 657 SUPERFAMILY FYVE/PHD zinc finger 151 190 IPR011011 -
Vvi14g1097 657 ProSitePatterns Zinc finger PHD-type signature. 115 188 IPR019786 -
Vvi14g1097 657 PANTHER CBP/P300-RELATED 12 523 IPR013178 GO:0004402|GO:0006355|GO:0016573
Vvi14g1097 657 SUPERFAMILY RING/U-box 500 556 - -
Vvi14g1097 657 Gene3D - 517 573 IPR043145 -
Vvi14g1097 657 SMART PHD_3 131 189 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi14g1097 Vvi-Chr14 21859980 21865827 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vvi14g1097 HAT_KAT11 1.2e-30 CL0257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g1097 K04498 - vvi:104881571 1314.29