Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g1068 ATGCGGATGAGCTGTAATGGGTGTAGAGTCCTCCGCAAGGGCTGCAGCGACAACTGCACCATCCGACCCTGTCTTCAGTGGATCAAAACCCCTGAATCTCAGGCCAATGCCACCGTCTTCCTCGCCAAATTCTACGGTCGCGCTGGCCTCATGAATCTCATCAACTCCGGCCCCGAACACCTCCGTCCTGCCATATTCAGTTCTCTTCTCTACGAGGCTTGTGGGAGGATCGTGAATCCCATTTATGGGTCTGTTGGGTTGCTGTGGTCTGGAAGCTGGCACCTCTGCCAGGCTGCCGTGGAGGCGGTGCTCAAGGGTGAGCCCATCACACAGATCACCTCTGAAGCAGCGGCCACCGGCCAGGGTCCACCGCTCAAGGCCTACGACATTCGTCACGTTTCCAAGGACGAGAACTCCGCCGCAAACGATCTCCACCGAGCCAAAAATAGGTGTCGGTTCAAGCGGTCCGGGGTGAGGGCGAAGTCTGGGAACAAAGCTGGAACTAACTCGGTTGCTGAGTCGAAGCAGGGGATGAACCGGGGTAGCCTCGCTGATGAGTTGAATCGGTCGACCAGTCACGACTCGACGGTGAGTCACCCGTCGGAGCCGCATACCGTGGAGGGCGAGAGCCGAGAGACTGTGAGCATGGTGTCTGTGGAGACGGCTGAGCCATCCTTTCTGTTCAGAGCCGAGCAGAAGCGGGTTCAGAAGCCGGAGAAGCGGGAGGAGAATAGGGGACTGGAGTTGGAACTGACGCTGGGGTTGGGTCCGATTCAGTCGGAGCGCTACATGAGTGGGAAGACGGGGGGCTATGGACCGTCTGACGGTGAGGGGTGTAAGATGGAGATGTAG 852 0.5857 MRMSCNGCRVLRKGCSDNCTIRPCLQWIKTPESQANATVFLAKFYGRAGLMNLINSGPEHLRPAIFSSLLYEACGRIVNPIYGSVGLLWSGSWHLCQAAVEAVLKGEPITQITSEAAATGQGPPLKAYDIRHVSKDENSAANDLHRAKNRCRFKRSGVRAKSGNKAGTNSVAESKQGMNRGSLADELNRSTSHDSTVSHPSEPHTVEGESRETVSMVSVETAEPSFLFRAEQKRVQKPEKREENRGLELELTLGLGPIQSERYMSGKTGGYGPSDGEGCKMEM* 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g1068 283 ProSiteProfiles LOB domain profile. 3 109 IPR004883 -
Vvi14g1068 283 MobiDBLite consensus disorder prediction 162 203 - -
Vvi14g1068 283 PIRSF AS2 1 268 IPR017414 -
Vvi14g1068 283 Pfam Lateral organ boundaries (LOB) domain 4 103 IPR004883 -
Vvi14g1068 283 MobiDBLite consensus disorder prediction 260 283 - -
Vvi14g1068 283 MobiDBLite consensus disorder prediction 139 213 - -
Vvi14g1068 283 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 3 252 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi14g1068 Vvi-Chr14 21211166 21212144 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi14g1068 1 283 AS2 family AT3G02550 53.401 2.69e-95 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vvi14g1068 LOB 2.1e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g1068 - - vvi:100261743 555.829