Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g1057 ATGGCAGAACCATACCCTCAATTATTTGAACATCCCTTGAGTTCTCTCAGGAGGCTCTATAATTGGAATTGTGTAATAGTTGATTTTTCTGACAGTATGCAGAGCTTTAGGCCTTCTCAACCTTTCTTGGGCATGGATGTGACCATGGAAATGGTGAACCAGTTTGCAGAGATGAATCCAATTATGTTGGAGAATTTCAACATAACTGATGTTTCAGTGGAGAATCTTTTGGCCCACCAGCAGCCTGAGCTCATGGGAACGTTTGCTTATAATCTTCAATCTAGTTTTGAGTCCAATGGACTGAGCTCAATGCCAGTGGTTCAGAGCATGCCCTCGAGTGGAAATGCTTTCCATGAAAGCAAGAGGAGAAAGGTGATGGAACAATCAAAAAGCAGCTCAGAGAACATTTCTTCTATGGCTTCTGGAAGTGGTTTGAAAGAAATTAGTAGTACTAAGAAAAAGAATAACTTGGGTAAAGGAAAGAAAGGGAGGAACAGTGATAAAGAATTATTGGACAAACCAGATGAAGTGATTCATGTCCGAGCAAGAAGAGGACAAGCTACTGACAACCACAGTATAGCAGAAAGGGTGAGAAGGGAGAAAATCAAGACTCGGCTGCGATGCTTGCAGGACCTTGTTCCTGGATGCTACAAGAATAAGGGAATGGCAGTAATGTTGGATGAGATAATCAATTATGTGCACTCACTGCAGAATCAGGTCGAGTTTCTTTCTAGGGAGCTTGCAGCAGCTAGTTCACTTCACAACTTCAACTCTGAAACAGAAGCTATAAAAAATGCTCAGGGAACAAATACACATGAGGGGCAGGAGATGGAGAAAATAGTGAGGAAAGGATATGGAGAACACTCTTGCTTCTACCCGACAAGGACCATTTGA 894 0.4217 MAEPYPQLFEHPLSSLRRLYNWNCVIVDFSDSMQSFRPSQPFLGMDVTMEMVNQFAEMNPIMLENFNITDVSVENLLAHQQPELMGTFAYNLQSSFESNGLSSMPVVQSMPSSGNAFHESKRRKVMEQSKSSSENISSMASGSGLKEISSTKKKNNLGKGKKGRNSDKELLDKPDEVIHVRARRGQATDNHSIAERVRREKIKTRLRCLQDLVPGCYKNKGMAVMLDEIINYVHSLQNQVEFLSRELAAASSLHNFNSETEAIKNAQGTNTHEGQEMEKIVRKGYGEHSCFYPTRTI* 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g1057 297 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 186 236 IPR011598 GO:0046983
Vvi14g1057 297 MobiDBLite consensus disorder prediction 107 176 - -
Vvi14g1057 297 SMART finulus 192 242 IPR011598 GO:0046983
Vvi14g1057 297 MobiDBLite consensus disorder prediction 160 176 - -
Vvi14g1057 297 Pfam Helix-loop-helix DNA-binding domain 190 237 IPR011598 GO:0046983
Vvi14g1057 297 MobiDBLite consensus disorder prediction 130 151 - -
Vvi14g1057 297 Coils Coil 226 253 - -
Vvi14g1057 297 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 111 265 IPR024097 GO:0006355
Vvi14g1057 297 Gene3D - 183 264 IPR036638 GO:0046983
Vvi14g1057 297 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 184 253 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi14g1057 Vvi-Chr14 21028630 21030253 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi14g1057 107 268 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G73830 52.121 9.65e-48 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vvi14g1057 HLH 0.00017 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g1057 - - vvi:104881566 575.474