Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g1044 ATGGCTGATATCCATTGTCAAACAAAACCAAATAATGCTACCATGGGTTTGAAGCTGTTTGGCTTCAACATTTCAGAAGTTGAGGAGTTGGAATCGGGAAAATCTCCATCGTCTCCGGAATCGGAGATTTTTCAGGCCGATGGCCGGAGATATGAGTGTCAGTACTGTTGCCGTGAGTTCGCCAACTCTCAGGCTTTAGGTGGTCATCAGAACGCTCACAAGAAGGAAAGACAGCAGCTGAAGCGAGCCAAATTGCAAGCATCTGCTCGGAGCTTTCCTGATTCTTTCATCCGAAACCCGATGGTATCAGCGTTCATGCCGCCGCCGCATCTTTTTGCACCGCCTTCCGCGCCACCACAATCGTTTCCTTGGGCTTACATGCCACGCGCCGGCGCAGCGCCATCTTTCCGCGCGCCGCAGCGTGGCTTCATGATTAAATGCGGCAGCGAGGCAGCGCCGGAAGCATATGCCGGCTACGAGAGGGAAACTCCTGTGAGGGCCACGCTGTATCGTGAAGTTCAGGCCCACGCCGGCGTTGTGCCGGAGTTGCTGAGAAGAGGTGATGATGGGCCACGTTTGGAAAAGGGCTTGGGCTTAGATTTGCATCTTAGTCTCGGGCCGGCCAAGCCATGA 633 0.5419 MADIHCQTKPNNATMGLKLFGFNISEVEELESGKSPSSPESEIFQADGRRYECQYCCREFANSQALGGHQNAHKKERQQLKRAKLQASARSFPDSFIRNPMVSAFMPPPHLFAPPSAPPQSFPWAYMPRAGAAPSFRAPQRGFMIKCGSEAAPEAYAGYERETPVRATLYREVQAHAGVVPELLRRGDDGPRLEKGLGLDLHLSLGPAKP* 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g1044 210 SUPERFAMILY beta-beta-alpha zinc fingers 48 78 IPR036236 -
Vvi14g1044 210 ProSiteProfiles Zinc finger C2H2 type domain profile. 51 78 IPR013087 -
Vvi14g1044 210 PANTHER ZINC FINGER PROTEIN 5 10 209 IPR044299 GO:0010090
Vvi14g1044 210 FunFam Zinc finger protein 6 39 100 - -
Vvi14g1044 210 ProSitePatterns Zinc finger C2H2 type domain signature. 53 73 IPR013087 -
Vvi14g1044 210 Gene3D Classic Zinc Finger 40 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi14g1044 Vvi-Chr14 20758279 20758911 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi14g1044 12 208 C2H2 Transcription Factor Family AT1G68360 42.739 1.97e-42 141
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g1044 - - vvi:100254923 407.527