Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g1033 ATGCCTCCCAATTTCTTCCCAGCTTATTCTGTTTTCTTGATGATCATGCTGATCCCTGTTCCGAGGGTTGTGTGCGAGGACAATCAACAATTCGTCAGCTGCGGCGCACAGTATGAGTGCGGGAATATGGTTATTAGTTATCCTTTCTGGGGAGGGAGTCGCCCTCCTTACTGTGGCCATCCAGGGTTCGAGCTGACTTGTGATGGTGAAGCCCCGGAGTTTACAATGAAGGAGGCGAGTTACCGAATCCTGGATATCAATAACTCATTCCATACTCTCACCGTTGCTAGGGCGGATTACTGGGATAGTTACTGCCCTCCTACATATGTTAACACCACTCTGAATGAATCCATTTTTAGTTATAATGCCACCTATACAGACGTGACCCTCTACTATGATTGTCCCCAACTTACTATCGCGCCTTCCAACCAGTTCAATTGCACCAATATCACTGGTTACTATACAACACTGGATCTTAACCTTAGCGTAAGCCCCGGGAGTTGCGGTGTGTATGTGACGGTTCCCATTTTTCAGTCAGCAGCTACCGCTATAGTGAGCGGTGGAGGTACACTGACTCTTCTTACAGAAGCTCTTAAGGGTGGTTTCGGGTTGGAGTGGAATGCCAGTAATAGTTTGTGTACAGAATGTGTTGAATCCGGTGGGCAGTGCGGCTATACCTCCAACCAATTCACATGCTATTGTCGGAATGGGTATCCTCTCTCCAGTTGCCAAACCACAAGATCAGGCATTGTTGCAGGTGTGGCTACGCTCATATTAGTTCTTGCAATGCTTGGTTGCCTTAGAATAATAAAATGCCCATTGGCGTGCAAGACATTGGTCTTCTGGAAGAAGGAATCAGAGGATGATGAAAATGTGGAAGCATTTATAAGGAACTATGGATCATTGGCTCCAAAGAGATACAATTATTCAGATGTTAAGAAAATGACCAACTCATTCACAAGTAAATTAGGTGAAGGAGGATTTGGTTGCGTGTACAAAGGAAAGCTCCCTGATGGTCGCATGATGGCAGTGAAACTTTTGAGTAAGTCAAAGGGTAATGGACAAGACTTTATTAATGAAGTTGCAAGCATCAGTAGAACTTCTCATGTTAATATAGTCACTTTTATGGGATTTTGTTTTGAGAGGAGTAGAAGAGCTCTGATTTATGAATTCATGCCCAATGGATCTCTTGATAAGTTCATCTATAATAGAGGATCCTCTAATGAAAGCCTGAACTTGGAATGGAAGACCATGTACCAAATTGCAGTCGGCATTGCTCGAGGACTAGAATACTTATACCGAGGTTGCAACACAAGGATTTTGCATTTTGACATAAAACCTCACAACATTCTTCTAGACCAAAACTTCATCCCAAAAATTTCTGATTTTGGCCTTGCTAAGCTATGCCAGAAGACAGAAAGCATGGTGTCAATGACGCACGCACGGGGCACCACTGGATACATAGCTCCCGAGGTATTCTGTAGAAACTTTGGAGGAGTCTCTCATAAATCCGATGTCTACAGCTATGGAATGTTGGTTCTTGAAATGGTTGGAGGGAGAAAGAATATTGATGTGCAAGTTTTCCAACTTGGATTTATAAGCAGCTTCAGCCAGGCAAGGATCTTACAGTACTTCGTAGTATCACCAATGAAGAGGAGGAAGAAACAGCGAGGAAGATGGTTTTAG 1686 0.4359 MPPNFFPAYSVFLMIMLIPVPRVVCEDNQQFVSCGAQYECGNMVISYPFWGGSRPPYCGHPGFELTCDGEAPEFTMKEASYRILDINNSFHTLTVARADYWDSYCPPTYVNTTLNESIFSYNATYTDVTLYYDCPQLTIAPSNQFNCTNITGYYTTLDLNLSVSPGSCGVYVTVPIFQSAATAIVSGGGTLTLLTEALKGGFGLEWNASNSLCTECVESGGQCGYTSNQFTCYCRNGYPLSSCQTTRSGIVAGVATLILVLAMLGCLRIIKCPLACKTLVFWKKESEDDENVEAFIRNYGSLAPKRYNYSDVKKMTNSFTSKLGEGGFGCVYKGKLPDGRMMAVKLLSKSKGNGQDFINEVASISRTSHVNIVTFMGFCFERSRRALIYEFMPNGSLDKFIYNRGSSNESLNLEWKTMYQIAVGIARGLEYLYRGCNTRILHFDIKPHNILLDQNFIPKISDFGLAKLCQKTESMVSMTHARGTTGYIAPEVFCRNFGGVSHKSDVYSYGMLVLEMVGGRKNIDVQVFQLGFISSFSQARILQYFVVSPMKRRKKQRGRWF* 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g1033 561 Pfam Protein kinase domain 320 521 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi14g1033 561 PANTHER RUST RESISTANCE KINASE LR10-RELATED 281 526 IPR045874 GO:0004672
Vvi14g1033 561 FunFam serine/threonine-protein kinase PBS1-like 283 391 - -
Vvi14g1033 561 SUPERFAMILY Protein kinase-like (PK-like) 298 524 IPR011009 -
Vvi14g1033 561 ProSitePatterns Protein kinases ATP-binding region signature. 323 345 IPR017441 GO:0005524
Vvi14g1033 561 Gene3D Transferase(Phosphotransferase) domain 1 392 556 - -
Vvi14g1033 561 Pfam Wall-associated receptor kinase galacturonan-binding 39 97 IPR025287 GO:0030247
Vvi14g1033 561 ProSiteProfiles Protein kinase domain profile. 317 561 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi14g1033 561 SMART serkin_6 317 561 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi14g1033 561 Pfam Wall-associated receptor kinase C-terminal 159 236 IPR032872 -
Vvi14g1033 561 ProSitePatterns EGF-like domain signature 2. 232 243 IPR000742 -
Vvi14g1033 561 ProSitePatterns Serine/Threonine protein kinases active-site signature. 440 452 IPR008271 GO:0004672|GO:0006468
Vvi14g1033 561 Gene3D Phosphorylase Kinase; domain 1 289 391 - -
Vvi14g1033 561 FunFam Os07g0541700 protein 392 484 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi14g1033 Vvi-Chr14 20520321 20526546 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi14g1033 8 520 Receptor kinase-like Gene Family AT1G66910 43.169 1.09e-133 402
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vvi14g1033 Pkinase 1.1e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g1033 - - vvi:100241191 1077.77