LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi14g1030	ATGCATCTCCATCTTTTTCCACTTTTCCTTATCCTCCTGTTCATGTTCATGGTCCCTGTTCCGAGGGTTGTGTGCGAGGCCAATCAACAATTCGTCAGCTGCGGCGCACAGTATGAGTGCGGGAATATGAATATTAGTTATCCTTTCTGGGGAGGGAGCCGCCCTCCTTACTGTGGCCATCCAGGGTTCGAGCTGACTTGTAATGGTGAAGCCCCGGTGTTTACGATGAAGGAGGCGAGTTACCGAATCCTGGATATCAATAACTCATTCCATACTCTCACCGTTGCTAGGGCGGATTACTGGGATAGTTACTGCCCTCCTACATATGTTAACACCACTCTGAATGAATCCATTTTTAGTTATAATGCCACCTATACAGACGTGACCCTCTACTATGATTGTCCCCAACTTACTATCGCGCCTTCCAACCAGTTCAATTGCACCAATATCACTGGTTACTATACAACACTGGATTTTAACCTTGGCGTAAGCATAGGGAGTTGCAGTGTGTATGTGACGGTTCCGATTTTCAAGTCAGCAGCTACCGCTATAGTGAGCGGTGGAGGTACACTGACTCTTCTTACTGAAGCTCTTAAGGGTGGTTTCGGGTTGGAGTGGAATGCCAGTAATAGTTTGTGTACAGAATGTGTTGAATCCGGTGGGCAGTGCGGCTATACCTCCAACCAATTCACATGCTATTGTCGGAATGGGTATTCTCCCTCCACTTGCCAAAACACAACAAGCGCATCAGGGACAGGCGGTAATAATGTACCAAAAACAGTAGGCTATTCCGTATTAGGTGCAGTCCTTTTGGGCATTTTCCTTGGATGTCTCTTCTATTTTCTTGCCCAACGGCGAAGACGTGCATCCAAAGCTAAAAGCAAGGACCTCCCTACTCCTCCTTCAAGCAAAGGCATTGCACCATCCTTAACTGGTTTCTCTGAGAGCATCCCCTCTTATCCCTATACAAAGTCTGACATTGAAAAGGGGAGCACCTACTTTGGAGTTCAGGTCTTCAGTTACATGGAACTTGAAGAAGCCACTAACAATTTCGACCCATCTAGAGAACTTGGAGATGGAGGATTTGGCACTGTTTACTACGGTAAACTACAAGATGGGCGTGTAGTTGCAGTTAAGCGCCTATATGAGAATAATTTCAAACGTGTTGAACAGTTCATGAACGAAGTTCAGATCCTAACTCGTTTACAACATCAAAACCTCGTGAAGTTGTATGGGTGCACCTCAAGGCGAAGCCGAGAACTCCTCCTTGTTTACGAATATATTCCTAATGGAACTGTGGCAGATCATCTTCACGGTAAGCAAGCAAACTCTGGCTCGATCACTTGGCCCGTAAGGTTGAGCATCGCCATAGAGACAGCCAATGCACTGGCTTACCTCCATGAGTCAGAAATCATACACCGTGATGTCAAAACAAACAATATTCTCCTGGATAACAATTTCCAGGTAAAAGTTGCTGATTTTGGGCTTTCTCGATTGTTCCCGACTGATGTCACCCATGTGTCAACTGCACCACAAGGGACGCCTGGCTATGTTGATCCCGAGTACCATCAGTGCTACCAACTGACGAGCAAGAGCGATGTTTATAGCTTTGGGGTGGTTTTGATGGAACTTATATCATCAAAACAAGCTGTGGACACCAATAGGCACCGGCATGATATTAATTTGGCCAACATGGCTGTGAACAAAATTCTAAATCATACGTTGCATGAGTTGGTGGATCCATCCCTTGGGTTTGAAAGTGATTCTCTTGTAAGGAGGAAAATAACGTTGGTGGCAGAGTTGGCTTTTCGGTGTCTGCAACATGAGAGGGATATGAGGCCTACCATGGGAGAAGTGCTCAAGGCTCTGAGACGAATTGAGAATGAAGAGAGCGACGTGCAGAAAGCAGAGGAGGTGGATATAAACTCAGAGGACATCGGGCTTTTAAAGAGTAACCCTCCCCCGGTCTCTCCAGATTCAGTGGTGGCTGATAAAGGGGTCAACCCTACTACACCTTATTCTTTCTAG	2028	0.461	MHLHLFPLFLILLFMFMVPVPRVVCEANQQFVSCGAQYECGNMNISYPFWGGSRPPYCGHPGFELTCNGEAPVFTMKEASYRILDINNSFHTLTVARADYWDSYCPPTYVNTTLNESIFSYNATYTDVTLYYDCPQLTIAPSNQFNCTNITGYYTTLDFNLGVSIGSCSVYVTVPIFKSAATAIVSGGGTLTLLTEALKGGFGLEWNASNSLCTECVESGGQCGYTSNQFTCYCRNGYSPSTCQNTTSASGTGGNNVPKTVGYSVLGAVLLGIFLGCLFYFLAQRRRRASKAKSKDLPTPPSSKGIAPSLTGFSESIPSYPYTKSDIEKGSTYFGVQVFSYMELEEATNNFDPSRELGDGGFGTVYYGKLQDGRVVAVKRLYENNFKRVEQFMNEVQILTRLQHQNLVKLYGCTSRRSRELLLVYEYIPNGTVADHLHGKQANSGSITWPVRLSIAIETANALAYLHESEIIHRDVKTNNILLDNNFQVKVADFGLSRLFPTDVTHVSTAPQGTPGYVDPEYHQCYQLTSKSDVYSFGVVLMELISSKQAVDTNRHRHDINLANMAVNKILNHTLHELVDPSLGFESDSLVRRKITLVAELAFRCLQHERDMRPTMGEVLKALRRIENEESDVQKAEEVDINSEDIGLLKSNPPPVSPDSVVADKGVNPTTPYSF*	676

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vvi14g1030	675	SMART	serkin_6	351	626	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vvi14g1030	675	CDD	STKc_IRAK	357	626	-	-
	Vvi14g1030	675	Pfam	Wall-associated receptor kinase C-terminal	162	236	IPR032872	-
	Vvi14g1030	675	Coils	Coil	619	639	-	-
	Vvi14g1030	675	Gene3D	Transferase(Phosphotransferase) domain 1	428	648	-	-
	Vvi14g1030	675	FunFam	Wall-associated receptor kinase-like 20	428	636	-	-
	Vvi14g1030	675	ProSitePatterns	EGF-like domain signature 2.	232	243	IPR000742	-
	Vvi14g1030	675	Pfam	Protein kinase domain	354	621	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vvi14g1030	675	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	471	483	IPR008271	GO:0004672\|GO:0006468
	Vvi14g1030	675	PANTHER	LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4	8	665	IPR044652	GO:0004672
	Vvi14g1030	675	ProSiteProfiles	Protein kinase domain profile.	351	626	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vvi14g1030	675	SUPERFAMILY	Protein kinase-like (PK-like)	332	626	IPR011009	-
	Vvi14g1030	675	MobiDBLite	consensus disorder prediction	291	310	-	-
	Vvi14g1030	675	MobiDBLite	consensus disorder prediction	643	675	-	-
	Vvi14g1030	675	ProSitePatterns	Protein kinases ATP-binding region signature.	357	379	IPR017441	GO:0005524
	Vvi14g1030	675	Pfam	Wall-associated receptor kinase galacturonan-binding	39	97	IPR025287	GO:0030247
	Vvi14g1030	675	Gene3D	Phosphorylase Kinase; domain 1	323	427	-	-
	Vvi14g1030	675	FunFam	WAK1-OsWAK receptor-like cytoplasmic kinase (OsWAK-RLCK)	323	427	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vvi14g1030	Vvi-Chr14	20426852	20433816	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vvi14g1030	38	672	Receptor kinase-like Gene Family	AT1G25390	43.741	1.09e-163	482

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_WAK_LRK10L-1	Vvi14g1030		Pkinase	9.9e-50	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vvi14g1030	-		-	vvi:100853550	969.533