Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g1017 ATGGAGTCGCCACCTCCGCCTCCCAATTCCGGCGCCAAGCTCCGTCTGATGTGCAGCTATAATGGCCACATACTCCCCAGACGCCACGCCAAGTCACTCTGCTACGCCGGTGGTGACACCCGCATCGTGGCCGTGGACCGCCGAGCCGCCGCCAGCCTCTCTGCCCTCACCACCCAGCTCTCCCAGACCCTCCAGATTCCGTACCAGTTCACTCTCAAATACCAGCTCCCGCACCACGACCTTGACTCCCTTATTTCGCTCACAACCGACGACGACCTCCTTAATATGTTCGAAGAGTACGACAATCTCCCCGCCTCACCTACGCCCTCCCGCATCCGATTGTTCCTCTTCCCCTCCAAGCCCGACTCTCCCGGGTCGGTCCTTCACGACCCGAAGTCTGAGTCGTGGTTCTTGGACGCGCTCAATAGCAGCGCCAAGGTTATGCAGAAGGGGAATTCATCTGATTCGGGGTTTGGTCATTCGGATCCGTTTCCGGCTGAGAACTTGGTTGGTATTAGTAGCGGGGGTTTGGATTCATTTTCGGTGCCCGAATCGGTCGTATTGGAGACCAATTCGTCGTTTGGGTCGACTTCTTCTTCGGTTTCTGTATCTAATTTGGCTGCAATGAGGGCTCATGTTGAGGATAGTGGTGTTAATTTGCAGGACAAGAAGGTTCATTTGCCCTTGTCCGAATCAATTGAAAGTGAAACTGTTGTTGCGAGTGTCATTTCTCACCCACAGACTGGTGGTCATGAAGACCCAGTTGTTAATATTCCTTTGGTGGACAACTGGGATTCTTCTAAGCCTGTTGGCTCAGAGAGTAATGTCTCTGATGCATTCGCTCGGATCCAAATTCATAAGGCAGTTGAGGTTTCTGGTTTTCCATCATCTTTACAGTTGGATCAGCAGCAACAACAATTGCAATTTGTCCCTGCTGGTGCTCAGTACATAACCCATTACCCCACTGGCCCAGTGCCAGTTTCTTCCTACTACCCAATATATCAACCACAGCTGCAACAGCAGCAGCCAACCTACTATCAATCCAATCGGCCATACCCTGTTTACTTGCTCCCTGTTAGGCCACCACAACCTTACAACTTCTCCATGCAAGGTAGTCTTATTGACTCTGCTACTGTTGCTTCTAGTCAGCCCCCAATGCATCTGAATGCAACCATGATTCCATCCCAAGTAGTTTACAAAGAGGTCACTGCAGCTCCACCCCTGCCTGATTTAGCCACAAAGGTTACTGGAACAGCCCCTGGGGTTACCCCACTAGTTCATGTGCCATCTAATGAAAATCAGCAGCAATTTGTGAGTATTCCTCAGATCCATCACCCAACACAGTCTATTCCTATTGCGTCCATGGAAGCTGCCAATTACAGTGCATTTGAGGATGATCCTGCACAGAGCCAGATATATAAAAGTCAGCCTCCAGCACCCATATTGCCTTCTCAATACCAAACCATGACCAATGCTACAAAAGCACTGTTATCAGAGGCCTTGGCACAGTCTCAGGCAGACAACATTAAGCAGCAAATCAGAACTCCACAGCCAAAATGA 1560 0.5038 MESPPPPPNSGAKLRLMCSYNGHILPRRHAKSLCYAGGDTRIVAVDRRAAASLSALTTQLSQTLQIPYQFTLKYQLPHHDLDSLISLTTDDDLLNMFEEYDNLPASPTPSRIRLFLFPSKPDSPGSVLHDPKSESWFLDALNSSAKVMQKGNSSDSGFGHSDPFPAENLVGISSGGLDSFSVPESVVLETNSSFGSTSSSVSVSNLAAMRAHVEDSGVNLQDKKVHLPLSESIESETVVASVISHPQTGGHEDPVVNIPLVDNWDSSKPVGSESNVSDAFARIQIHKAVEVSGFPSSLQLDQQQQQLQFVPAGAQYITHYPTGPVPVSSYYPIYQPQLQQQQPTYYQSNRPYPVYLLPVRPPQPYNFSMQGSLIDSATVASSQPPMHLNATMIPSQVVYKEVTAAPPLPDLATKVTGTAPGVTPLVHVPSNENQQQFVSIPQIHHPTQSIPIASMEAANYSAFEDDPAQSQIYKSQPPAPILPSQYQTMTNATKALLSEALAQSQADNIKQQIRTPQPK* 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g1017 519 Gene3D - 33 118 - -
Vvi14g1017 519 Pfam PB1 domain 31 118 IPR000270 GO:0005515
Vvi14g1017 519 SUPERFAMILY CAD & PB1 domains 30 124 - -
Vvi14g1017 519 PANTHER OS05G0427100 PROTEIN-RELATED 7 385 - -
Vvi14g1017 519 CDD PB1_UP2 17 117 - -
Vvi14g1017 519 SMART PB1_new 28 119 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi14g1017 Vvi-Chr14 20101180 20103158 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi14g1017 12 169 MAP Kinase Kinase Kinase AT1G16270 37.423 5.40e-21 95.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g1017 - - vvi:100246403 927.546