Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g1015 ATGGCAAGGCCATTTTCGTCAAATCGAGAAAAAACTAACCCTAACCCTAAAGAGGGAGAGAAAATGAAGTACAATCCACGAGTTACCAGCTCTAGACGCAAGTGCCGGAAGGCCCACTTTACAGCGCCGTCGAGCGTCCGCCGCGTGCTGATGAGCGCGCCGCTCTCAACTGACCTCAGGAACAAATACAACGTCCGATCAGTACCTATCCGCAAGGACGACGAGGTCCAGGTGGTGCGCGGCACCTTCAAGGGCCGCGAGGGAAAGGTGGTTCAGGTGTATCGTCGGAAGTGGGTCATACATATAGAGCGCATTACGCGGGAGAAGGTCAATGGCTCCACTGTCAACGTTGGGATCAACCCGTCTAAGGTGGTCATCAACAAGCTCAAACTCGACAAGGATCGCAAGAGCCTCCTCGACCGCAAGGCCAAGGGCAGGGCCGCAGATAAGGCCAAGGGCAAGTTTACCGCCGAGGATGTGGCTGCCGCCGCCGCGCCCTCTCTCCAAGAGATCGATTAA 519 0.5607 MARPFSSNREKTNPNPKEGEKMKYNPRVTSSRRKCRKAHFTAPSSVRRVLMSAPLSTDLRNKYNVRSVPIRKDDEVQVVRGTFKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVINKLKLDKDRKSLLDRKAKGRAADKAKGKFTAEDVAAAAAPSLQEID* 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g1015 172 PANTHER 60S RIBOSOMAL PROTEIN L26 FAMILY MEMBER 22 161 IPR005756 GO:0003735|GO:0006412|GO:0015934
Vvi14g1015 172 SMART kow_9 69 96 IPR005824 -
Vvi14g1015 172 Pfam KOW motif 72 103 IPR005824 -
Vvi14g1015 172 SUPERFAMILY Translation proteins SH3-like domain 29 146 IPR008991 -
Vvi14g1015 172 MobiDBLite consensus disorder prediction 13 27 - -
Vvi14g1015 172 Pfam Ribosomal proteins L26 eukaryotic, L24P archaeal 29 142 IPR005756 GO:0003735|GO:0006412|GO:0015934
Vvi14g1015 172 Gene3D - 22 164 IPR014722 -
Vvi14g1015 172 MobiDBLite consensus disorder prediction 1 32 - -
Vvi14g1015 172 NCBIfam 50S ribosomal protein L24 30 143 IPR005756 GO:0003735|GO:0006412|GO:0015934
Vvi14g1015 172 CDD KOW_RPL26 73 126 IPR041988 GO:0003723
Vvi14g1015 172 ProSitePatterns Ribosomal protein L24 signature. 73 90 IPR005825 GO:0003735|GO:0005840|GO:0006412
Vvi14g1015 172 FunFam 60S ribosomal protein L26 22 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi14g1015 Vvi-Chr14 20081355 20081976 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi14g1015 22 160 Cytoplasmic Ribosomal Protein Gene Family AT3G49910 87.234 1.16e-84 244