Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g1013 ATGGAGAACGAAAGTAATTCACTACAGAGTCGGCTGATCTTGGAGTGCCAGGAGTTGTGCGACCAGTACGACCTGTGCCGTGCCCGTCTCCATCAGCTGGCCAAGGAAGTGGAAGCGCTGCGTCAAGAGAACAGCGACCTGAGATCGGCTAACAGAGAGCTTGTGGAGCACTTGAACATCTTGTCTGAGGCTAGGATGCGTGAAAACTTTCTCTGTTATGATTTTCGGAGACTGAGTGTTGGTGAGGGTCACGGAGTGGATGAAGTTTGTGGGATCAGCCCCACCAGTGTGATCCAGCGGAAGGGCTTTCGGAGGAATGTTGAGCACATCCCACTGCCTAAGAGTATATCGGTTCGTTCCAGTTGTTATTTGAAGATGAATCACTCTGGTAGAAGCAATAAAGCAGCTTCTCCTCAGCCCCTCAATAATCCACTTGTCCATGCAACGTGCGGACGAGAACAGCAACGCTCGCATGTGCCAAGAGGGAGAGGCGCAGAAGAAGAAGAAGAAGAAGAAGAAGCAGTGAAAGTGGAGGTGTACAACCAGGGAATGTTCAAAACTGAGCTATGCAACAAGTGGCAGGAGAAGGGCACGTGTCCCTACGGCGATCTCTGCCAGTTCGCACATGGCATCACCGAGCTCCGTCCCATCATCAGGCACCCACGCTACAAGACTGAAGTTTGTAGAATGGTTCTCGCCGGCGCCACCTGTCCTTATGGCCACCGCTGCCATTTCCGCCACTCCCTTTGCCCACCTTGA 759 0.5257 MENESNSLQSRLILECQELCDQYDLCRARLHQLAKEVEALRQENSDLRSANRELVEHLNILSEARMRENFLCYDFRRLSVGEGHGVDEVCGISPTSVIQRKGFRRNVEHIPLPKSISVRSSCYLKMNHSGRSNKAASPQPLNNPLVHATCGREQQRSHVPRGRGAEEEEEEEEAVKVEVYNQGMFKTELCNKWQEKGTCPYGDLCQFAHGITELRPIIRHPRYKTEVCRMVLAGATCPYGHRCHFRHSLCPP* 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g1013 252 MobiDBLite consensus disorder prediction 151 173 - -
Vvi14g1013 252 ProSiteProfiles Zinc finger C3H1-type profile. 222 250 IPR000571 GO:0046872
Vvi14g1013 252 FunFam Zinc finger protein 36, C3H1 type-like 1 218 251 - -
Vvi14g1013 252 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 223 248 IPR000571 GO:0046872
Vvi14g1013 252 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 185 210 IPR000571 GO:0046872
Vvi14g1013 252 ProSiteProfiles Zinc finger C3H1-type profile. 184 212 IPR000571 GO:0046872
Vvi14g1013 252 FunFam zinc finger CCCH domain-containing protein 15-like 178 217 - -
Vvi14g1013 252 SMART c3hfinal6 184 211 IPR000571 GO:0046872
Vvi14g1013 252 SMART c3hfinal6 222 249 IPR000571 GO:0046872
Vvi14g1013 252 SUPERFAMILY CCCH zinc finger 218 249 IPR036855 GO:0046872
Vvi14g1013 252 Gene3D - 218 250 - -
Vvi14g1013 252 Gene3D - 178 216 - -
Vvi14g1013 252 SUPERFAMILY CCCH zinc finger 181 216 IPR036855 GO:0046872
Vvi14g1013 252 Coils Coil 23 67 - -
Vvi14g1013 252 PANTHER CCCH ZINC FINGER/TIS11-RELATED 16 249 IPR045877 GO:0003729
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi14g1013 Vvi-Chr14 20028092 20029159 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi14g1013 17 249 C3H Transcription Factor Family AT1G68200 50.397 7.73e-65 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vvi14g1013 zf-CCCH 7.3e-05 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g1013 K18753 - vvi:100265124 516.924