Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g0998 ATGATTAGTGCGGACAGTCAAATACTATTTGCCAAAGCAAGTGAATTGTTCATCCTAGAGCTCACACTTCGAGCATGGTTTCATGCGGAAGCCAACAAACGCCGAACTCTGCAGCCATGTGATATAGGGAGAGCCATACGATGTTACCCAACTCTGCATTTCTTGACAAACATTGCTCCCGATGTGCATAAGGAAGAGCACAGTGAAAATATTTCAGGAGGAGCAGGATTTGTTGTGGCAAATGAGGGAGTACATTTTCCTGCAGCAAACCATGAATTAATAATGTGGAATCATGAAATCCCTTGTTCTGTTCAGCTGCCACCTATTACTTCTTCTGAAATGGTGAACAAAAATGCTCCCAAGCGAGGAAAATGTGATGGAGGCATGTGA 390 0.4333 MISADSQILFAKASELFILELTLRAWFHAEANKRRTLQPCDIGRAIRCYPTLHFLTNIAPDVHKEEHSENISGGAGFVVANEGVHFPAANHELIMWNHEIPCSVQLPPITSSEMVNKNAPKRGKCDGGM* 130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g0998 129 SUPERFAMILY Histone-fold 1 61 IPR009072 GO:0046982
Vvi14g0998 129 Pfam Core histone H2A/H2B/H3/H4 1 47 IPR007125 GO:0003677
Vvi14g0998 129 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 1 69 - -
Vvi14g0998 129 Gene3D Histone, subunit A 1 60 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi14g0998 Vvi-Chr14 19804296 19805093 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi14g0998 1 86 CCAAT-HAP5 Transcription Factor Family AT5G63470 52.809 4.40e-22 86.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Vvi14g0998 Histone 1.6e-07 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g0998 - K08066 vvi:100853057 270.781