Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g0993 ATGATGAGAAGCATGTTGGATGAGAAGAAGAAGGCTGCAGATCGGTACCTGAAGCGCCAAGTTCTCGGAGAGGGCACATACGGCGTCGTTTACAAGGCCTTCGACACCATGACTGGGCAGACTGTTGCCATTAAGAGAATTCGGCTTGGGAATTACAAGGAGGGTGTGAATTTCACTGCACTTAGGGAAATCAAACTCCTTAAAGAGCTCAAGGACCCGAATATAATTGAGTTGATTGATGCATTTCCTCATGATGGAAATTTGCACCTAGTGTTTGAATTCATGCAGACTGACTTGGAAGCTGTTATTCGAGATAGAAATATTGTTCTTTCTCTAGCTGATATAAAGTCATATATGCAGATGACATTGAAGGGGCTTGCATATTGTCATAAGAAATGGGTTGTTCATAGAGATATGAAGCCAAACAATTTACTGATAGGAGAAGATGGACAGCTTAAATTAGCAGATTTTGGTTTAGCACGCATATTTGGGAGCCCAAATCGCAAATTCACTTACCAGGTTTTTGCTCGATGGTACAGGGCACCTGAATTGTTGTTTGGTGCCAAACAATATGGATCAGGGGTTGATATCTGGGCTGTGGCTTGTATATTTGCTGAGCTTCTCCTTCGCAGACCCTTTCTGCAGGGATCTAGTGACATTGATCAATTAGGAAAGATCTTTGCAGCATTTGGGACTCCAAAACCTTCCCAGTGGCCTGACATGGTTTGCCTTCCTAATTATATGGAATACCAGTATGTTCCGGCACCCCCATTGCGAACATTGTTTCCAACTGCAACTGATGATGCTTTGGATCTTTTAGCAAAGATGTTCACTTATGATCCAAGAGCAAGAATTTCTGCAGAGCAGGCACTGGAGCACAGGTATTTTTCTTCTTTACCGCTGCCAACTAAACCAGCGGAGCTTCGTATACCTCCTCCAAAGGGGGATTCTTCCAATCCTGAACCCTTAGATCTTAATCAACAACAGAGTGGTCCAACTGTACTATCACCATCAAGAAAATTGAGGAGAGTGACACTAGATCATGAAAGGATTTGA 1056 0.4299 MMRSMLDEKKKAADRYLKRQVLGEGTYGVVYKAFDTMTGQTVAIKRIRLGNYKEGVNFTALREIKLLKELKDPNIIELIDAFPHDGNLHLVFEFMQTDLEAVIRDRNIVLSLADIKSYMQMTLKGLAYCHKKWVVHRDMKPNNLLIGEDGQLKLADFGLARIFGSPNRKFTYQVFARWYRAPELLFGAKQYGSGVDIWAVACIFAELLLRRPFLQGSSDIDQLGKIFAAFGTPKPSQWPDMVCLPNYMEYQYVPAPPLRTLFPTATDDALDLLAKMFTYDPRARISAEQALEHRYFSSLPLPTKPAELRIPPPKGDSSNPEPLDLNQQQSGPTVLSPSRKLRRVTLDHERI* 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g0993 351 Gene3D Phosphorylase Kinase; domain 1 5 96 - -
Vvi14g0993 351 FunFam Cyclin-dependent kinase D-1 7 96 - -
Vvi14g0993 351 ProSiteProfiles Protein kinase domain profile. 16 296 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi14g0993 351 ProSitePatterns Protein kinases ATP-binding region signature. 22 45 IPR017441 GO:0005524
Vvi14g0993 351 MobiDBLite consensus disorder prediction 320 336 - -
Vvi14g0993 351 SMART serkin_6 16 296 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi14g0993 351 Pfam Protein kinase domain 18 296 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi14g0993 351 SUPERFAMILY Protein kinase-like (PK-like) 12 302 IPR011009 -
Vvi14g0993 351 MobiDBLite consensus disorder prediction 303 351 - -
Vvi14g0993 351 PANTHER CELL DIVISION PROTEIN KINASE 14 301 - -
Vvi14g0993 351 ProSitePatterns Serine/Threonine protein kinases active-site signature. 134 146 IPR008271 GO:0004672|GO:0006468
Vvi14g0993 351 Gene3D Transferase(Phosphotransferase) domain 1 97 311 - -
Vvi14g0993 351 CDD STKc_CDK7 15 308 IPR037770 GO:0005675|GO:0008353|GO:0070985
Vvi14g0993 351 FunFam Putative cyclin-dependent kinase 7 97 312 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi14g0993 Vvi-Chr14 19628865 19651475 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi14g0993 10 344 Core Cell Cycle Gene Families AT1G66750 76.119 0.0 545
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CDK7 Vvi14g0993 Pkinase 1.1e-70 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g0993 K02202 - vvi:100244503 712.22