Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g0985 ATGACAGTAAGAGTAGGTGCCATGGATGGGATGACAGAAAGTGATTTGCTCATTCCTTCTCTCCTGGACAAAGGCATTGGATTTTCTTCATCAAGTTTGTCTATGGTTCCAGGAATACCTATTAAGCCAATGCTTGCAAAAATCACCAATGGAGTCCCTCAAGCTTTAAAGCTCTTCCAAAATAAAGCTTTTACATGTGAATATAAATATGATGGTCAGCGCGCCCAAATTCACAAACTAGTTGATGGATCGGTGCGTATCTTTTCAAGAAATGGGGATGAAACGACATCAAGGTTTCCAGATTTGGTTAGTGTGGTCAGGGAATCATGTAAGCCTGATGCATTGACTTTCATACTGGATGCTGAGGTAGTTGCAATTGATAGAAAGAATGGCAGCAAGCTCATGTCCTTCCAGGAATTATCTTCACGAGAGAGAGGAAGCAAAGATTCCTTGATCACATTGGATAGCATAAAGGTTGACATTTGTGTCTTTGTCTTTGATATCATGTTTGCTAATGGAAAACAGCTTTTGGATATTCCTCTGCGTCAAAGAAGAAAATATTTGAAGGATTTGTTTAACAACCAGAAATTGGGTTATTTTGAATATGCAGAGGAAACAACAGTGGAAGCAGATGATGCTTCAACCAATGAAGCCACATTGACTAAAATAAATTTGTTTCTTGAAGAAGCATTTCGCTCCTCATGTGAAGGAATTATGATTAAATCTCTAGATATTGATGCTGGATATTCTCCATCTAAGCGTACTGACACATGGTTAAAGGTCAAGCGAGATTATGTGGAAGGATTGAATGACTCACTTGATTTAGTCCCAATCGGTGCTTGGCATGGCAATGGGAGAAAAGCAGGCTGGTATAGTCCATTCCTCATGGCTTGTTACAACCCTGACACAGAGGAATTCCAAAGTGTATGTCGTGTCATGTCAGGGTTCTCAGATAATTTCTACAAAGAGATGAAAGAGTTCTTTAATGAAGACAAGATATTATCCAAAAAGCCACCTTATTATCAGACAGCTGAGCTGCCCGATATGTGGTTTACTCCAGAACTTATTTGGGAAATAAGAGGGGCAGACTTCACTGTGTCTCCAGTTCATCAGGCAGCCATAGGTTTAGTTCATCCATCCCGTGGCATCTCAGTACGATTTCCAAGGTTCATTCGACCTATAATGGATAGAAGACCAGAGGAATGTAGCACAGCTGCAGATATAGCTGATATGTTTCATTTTCAGACCAGAAAGATGGATGTAACACACCATAATTGA 1278 0.3998 MTVRVGAMDGMTESDLLIPSLLDKGIGFSSSSLSMVPGIPIKPMLAKITNGVPQALKLFQNKAFTCEYKYDGQRAQIHKLVDGSVRIFSRNGDETTSRFPDLVSVVRESCKPDALTFILDAEVVAIDRKNGSKLMSFQELSSRERGSKDSLITLDSIKVDICVFVFDIMFANGKQLLDIPLRQRRKYLKDLFNNQKLGYFEYAEETTVEADDASTNEATLTKINLFLEEAFRSSCEGIMIKSLDIDAGYSPSKRTDTWLKVKRDYVEGLNDSLDLVPIGAWHGNGRKAGWYSPFLMACYNPDTEEFQSVCRVMSGFSDNFYKEMKEFFNEDKILSKKPPYYQTAELPDMWFTPELIWEIRGADFTVSPVHQAAIGLVHPSRGISVRFPRFIRPIMDRRPEECSTAADIADMFHFQTRKMDVTHHN* 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g0985 425 Pfam ATP dependent DNA ligase domain 43 262 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Vvi14g0985 425 Gene3D - 267 424 IPR012340 -
Vvi14g0985 425 ProSiteProfiles ATP-dependent DNA ligase family profile. 154 300 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Vvi14g0985 425 Pfam ATP dependent DNA ligase C terminal region 288 392 IPR012309 GO:0003910|GO:0006281|GO:0006310
Vvi14g0985 425 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 13 417 - -
Vvi14g0985 425 NCBIfam ATP-dependent DNA ligase 16 412 IPR000977 GO:0003910|GO:0005524|GO:0071897
Vvi14g0985 425 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 67 75 IPR016059 GO:0003909
Vvi14g0985 425 Gene3D DNA ligase/mRNA capping enzyme 72 203 - -
Vvi14g0985 425 FunFam DNA ligase 267 424 - -
Vvi14g0985 425 SUPERFAMILY Nucleic acid-binding proteins 271 415 IPR012340 -
Vvi14g0985 425 CDD Adenylation_DNA_ligase_I_Euk 34 265 - -
Vvi14g0985 425 FunFam DNA ligase 72 203 - -
Vvi14g0985 425 Gene3D - 53 266 - -
Vvi14g0985 425 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 37 268 - -
Vvi14g0985 425 CDD OBF_DNA_ligase_I 271 413 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi14g0985 Vvi-Chr14 19488977 19528339 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi14g0985 15 415 Core DNA Replication Machinery Family AT1G08130 43.424 7.29e-119 363
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g0985 - - vvi:100266816 833.943